LOC110503038


Basic Information

Item Value
gene id LOC110503038
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 56044331 ~ 56059595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110503038
ATGCACGGGCCAGAGATGGAGAAATGCAATGAAAACCCCCTTGTATATATCGACGTGTCTGCATTCATCCACCTCACTTTGCTGACGAACATAGATTTAGGGgactttctccctcctccctctgagGTGGAGAACAGTGTGAACGTGACACATATATTTGGTGCCATCCCTCAAGGCCTGACTCATTTGAACATTTCCTCCATTGGTACCCTCTTACCATCATCAACAGCACCCTAAAACCCGGCCTCACTCTTCAGCTACGTGCTCAACTGCTGAAGGCCAATCTTCCAGTCTGTCTTCAGTCTCACAGCAGTAATGATCAACTTCTATGTGGGCATCACTTCACCGCACAGTACCTCACCTCCCTGGAATACTTATCTGACCTGGACATGCTTGTGCAGCTGAGGTTTCTGAACCTGATGGGAGAGGCTGGCCAACATGTTTCACAACCTGACCAGGCTGGAGAGCCTGAATTCAATTCACTCTGGAGGAAGAGCTGAGCAGAGACCTCCACTCCCTCAGGCAGTTGATGGTGGAATCTCTAGAAGAGTTCAGTGTGATGGAGAGCTTCCCAGAGACCCTGACCAGCCTAAGGTCCCTGGTATTCTATGTTCCTCGAATACATTGCAACTGTGATAACTCCTGGCTGGTCCCCTGGGCCCAAGGACAGAGACATGTCCAGGTCATCAGTTGTGATAAGGACTCAAAGGCCAACTGTTCCCTAGACGTGGGTTTTGTCTTGTTCATCTGCAACTCCATGGGCCTTCTCCTCTTCATGCTGGTGGTGCTGCTCCATTAGCTGTCCGGGGACTACCTGCTGTCCCTCGGACACATCTCCCGCAGCTGTCTGGAGGAGGTCATGTCTCTAGAGGCCTTTGAGTCGTTCAGCAGGAGCGACAAACGCTGGGTGGTGGAGAAGCTACTGCCAGGCATGGAGCAGAGGAGGCCCCCATTCCTGTGTCTCAGCTTGCACAGCAGGGACTTCCTGCTGGGGAAGGACATCATGACAACATCACAGACAGCCTCTATGGCAGCTGCTACTCCATGAGTCGTCACAACCTGTGCAGTAACTGGTGCTCTTTAAAGCTACGCCTGGCCACCCTCCGTCTGCTGGTGGAGCACAGGAACATCCTCATCCTGGTCTTCCTTGAGGACATCCCCTTCAGCCACTGGCAAGACTGGTCAAGCCGTCTGGCAAGACTGGTCAAGACCAGGACCTATCTGGACTGGCCCCAGGACTCAGCCTTGCAGCCCCCCTTCTGGACCGAGTGTCGACCAAACTGGCTGCTCCAGGGCCTGTGTGAACAACCTGGTATCAAATCAAGGTTGTCATAG
>TU2153589
TTGTAATAGGGACTCAAAGGCCAACTGTTCCCTAGACGTGGGTTTTGTCTTGTTCATCTGCAACTCCATGGGCCTTCTCCTCTTCATGCTGGTGGTGCTGCTCCATTAGCTGTCCGGGGACTACCTGCTGTCCCTCGGACACATCTCCCGCAGCTGTCTGGAGGAGGTCATGTCTCTAGAGGCCTTTGAGTCGTTCAGCAGGAGCGACAAACGCTGGGTGG

Function

NR:

description
toll-like receptor 13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110503038 False 1335 mRNA 0.55 3 56044331 56059595
TU2153589 True 221 lncRNA 0.55 1 56044755 56044975

Neighbor

gene id symbol gene type direction distance location
LOC110502998 LOC106610959 coding downstream 59479 55981267 ~ 55984852 (-)
LOC110502996 LOC107666370 coding downstream 840138 55190470 ~ 55204193 (-)
LOC110502991 NA coding downstream 973185 55068829 ~ 55071146 (-)
LOC110502990 LOC106610860 coding downstream 1276666 54756179 ~ 54767665 (-)
LOC110502987 cssa01h1orf101 coding downstream 1349989 54677565 ~ 54694342 (-)
LOC110503002 LOC106610976 coding upstream 700484 56760079 ~ 56780244 (-)
LOC110503005 LOC106611007 coding upstream 796985 56856580 ~ 56886643 (-)
LOC110503039 LOC106610997 coding upstream 847885 56907480 ~ 57068071 (-)
LOC110503007 LOC106586972 coding upstream 1011732 57071327 ~ 57116725 (-)
LOC118943925 NA coding upstream 1049465 57108428 ~ 57110865 (-)
G1882413 NA non-coding downstream 76231 55967805 ~ 55968100 (-)
G1882383 NA non-coding downstream 105633 55938239 ~ 55938698 (-)
G1882362 NA non-coding downstream 120226 55923890 ~ 55924105 (-)
G1882357 NA non-coding downstream 123010 55921101 ~ 55921321 (-)
G1882349 NA non-coding downstream 126786 55916990 ~ 55917545 (-)
G1883032 NA non-coding upstream 145664 56205259 ~ 56205533 (-)
G1883061 NA non-coding upstream 209000 56268595 ~ 56268812 (-)
G1883062 NA non-coding upstream 209954 56269549 ~ 56269752 (-)
G1883063 NA non-coding upstream 212845 56272440 ~ 56272688 (-)
G1883083 NA non-coding upstream 250585 56310180 ~ 56310433 (-)
G1881414 NA other downstream 1040707 55002766 ~ 55003624 (-)
G1880780 NA other downstream 1797645 54244782 ~ 54246686 (-)
LOC110503036 LOC106610742 other downstream 1970382 54039018 ~ 54073953 (-)
G1879406 NA other downstream 2879980 53163242 ~ 53164351 (-)
G1878770 NA other downstream 3400822 52643088 ~ 52643509 (-)
G1883219 NA other upstream 546411 56606006 ~ 56610640 (-)
G1883244 NA other upstream 584412 56644007 ~ 56709888 (-)
LOC110503041 LOC106579580 other upstream 1530449 57590001 ~ 57616121 (-)
G1884227 NA other upstream 1674762 57734357 ~ 57735498 (-)
G1882563 NA non-coding upstream 9049 56054024 ~ 56054361 (-)

Expression


Co-expression Network