LOC110503004 (LOC106611018)



Basic Information


Item Value
gene id LOC110503004
gene name LOC106611018
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 56829056 ~ 56843475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021581367.2
GCCAGCCAGCCACGCAACACTAGAGCTACTGAAAACATGGCTGCTTCTGTACGGGTGAGGACGTGGAACAGCAAGGCTAGCTCAGTCAAACCCTGGCTCCTTCTTTTGACAGGGTTCATTTTATTGGGCGATGTAAATAGCGGGGTCATGGCAGCACCAGAACCGGGACAATGGAGTATTACAGTTGTCAATACCTCAAGACCATTACTTTTGAGGAAATCCATGTATAAAGACACTGATATCAAATTGAAAGTTGTGTCCTTTGGTTGTCCAGAGGAGATGACTTTTACCATTCAATGGTACTTGAAATACTATCCCTGCCACAATGAGTTCAATAATATTGAGGAAATGTATGAGAGGACGCCACTGAGTCGAGGACAGAGTATGGATCCTAACCCTCTAGGACAAGGGGAATGCATTGAGCACAAGCACAAGCCCTTGAGCTGCAACAATGACCTGCGATACTTCCCAATGCTAAATAAAGCCAAGGCAGAACCACGGCCAGTTGTCCCTCCCATGGAAGGAGCAGCACCGGGCTCAGATGAAAACTACACGAAGTGGACGATGGAGGAGTACGACAAAGTCGGCGGTCTGAAGAACGGCAGTGTGTCGCTTAAACATGACGTCATCGCCACCACGTGGAAGGACGGCCCCTATCTGCTGGTGGTGGTGATTAAGTCTAACAAACAGGAAGCCAACTGGAATCTAACAGTCAACGTCGTAATGAAAGGAACTCACGGCTACATCTCCATCACAGAATGGCCTCTCATGATCtTCTACATGGTGATGTGTACAGTGTACATCCTGTATGCGTTACTCTGGTTCCTGTGGGCTGCCTGCTACTGGAAGGACTTACTGCGGATCCAGTTCTGGATAGCTGGAGTCATCTTTCTGGGCATGGTGGAGAAGGCTGTGTTCTGTGCTGAGTACGAGAACACCAACGGTGTCGGGGCAGCTTCTCCAGGCCTGTTGATCTTTGCTGAGCTCATCTCTGCCCTGAAGAGAACCCTGGCACGGCTGCTGGTCATTATCGTCAGTCTGGGATATGGTATAGTCAAACCTCGACTGGGTACAGTGATGCACAGAGTGGTGGGACTAGGTGTGATGTACTTTGCCTTTGCTGCCATCGAAGGTGTGCTTAGGATCACTGGGgCGAAAGACTCTGACCTGGCTCTGTTGGCCAACATTCCTCTGGCTCTGCTTGACTCTTCTCTCTGCTGGTGGATATTTGTGAGCCTGGCTCACACTATAAAGACACTGAAGCTGAGGAGAAACCCAGTGAAGCTGTCTCTCTACAGACATTTCACAAACACACTCATCTTTGCCATTATAGCTTCAATCATTTTCATGGTGTGGACGACGAAAAAATTCAGACTAGCCGACTGTCAATCTGACTGGGTGGAGCTGTGGGTTGATGATGCCTTCTGGAGGTTCCTGTTCTCCATCATACTGCTGGTTATCATGTTCTTATGGAGACCCTCTGCTAACAACCAAAGATATGCGTTCACTCCACTGATGGATGACTCTGACGATGAGGAGATTGAGGAGTTCCTGGTGTCAGCTAATTTAGCTGATGGCATAAAGCTGAGAGCCTCCAACTTTAAGAGTGAGATGAACGGCTCAGCCAAGCCTTCAGGATCTAACCCGGATGAAGACTTGAAGTGGGTGGAAGAGAACATTCCTACCTCTCTAACAGACGTAGCGTTGCCCGTCCTTCTTGATTCAGATGAGGAAATCATGACTACAAAATATGAAATGTCCAAGATGGAGTAACATGGGAAATCTTCCTACTACCCACGATGGATGCAGAGCATCTCTTCCTTCTGAGATTGGTTCCTCCTGCATGGCATGGAAGAGACAGATCACCAGGAGTGCGACACCTATCCCGTCCTAGGCCTGTTTAGGCTGACAGTCAGACCTTTGTCTACAATACTACTGGGGCTTAACACCTCTGACTTGGCGATCAGCAGGGTCCTCCTATTCATTGGGTATCAAATGGACGAAAACTGATTTTAACAGGAggtactacctgaacttgtccaataagaaatgctggTTATAGTTTTCCGTTGCAAACATTTTTGCTGCAGTGTGCCCTAATGTGTTTagccctctcaccctctccacaAACCAAGACATAACAATTGAGTGTGTCCCAAAGTGCACCCTATtcggtgccttcggaaagtattcagactcctttactttttttcacatttcgttacgttacagccatattctaaaattgataaaatgttgtttttttccccctcatcaaactacactcaataacccataa

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021581367.2 True 2299 mRNA 0.47 19 56829056 56843475

Neighbor


gene id symbol gene type direction distance location
LOC110503003 LOC106611055 coding upstream 324 56812404 ~ 56828732 (+)
LOC118943924 NA coding upstream 119090 56701366 ~ 56709966 (+)
LOC110503001 LOC106611028 coding upstream 128072 56613066 ~ 56727194 (+)
LOC110503000 prkce coding upstream 218298 56311640 ~ 56610758 (+)
LOC110502999 NA coding upstream 787702 55985543 ~ 56041354 (+)
LOC118943926 NA coding downstream 535654 57379129 ~ 57399437 (+)
LOC110503012 LOC106611138 coding downstream 656219 57499694 ~ 57540368 (+)
LOC110503013 NA coding downstream 701800 57545275 ~ 57550796 (+)
LOC110503040 LOC106579579 coding downstream 727271 57570746 ~ 57588495 (+)
LOC118943835 NA coding downstream 2021140 58864615 ~ 58865931 (+)
G1882902 NA non-coding upstream 63401 56728623 ~ 56765655 (+)
G1882901 NA non-coding upstream 100590 56728250 ~ 56728466 (+)
G1882891 NA non-coding upstream 133901 56694766 ~ 56695155 (+)
G1882884 NA non-coding upstream 156112 56672561 ~ 56672944 (+)
G1883403 NA non-coding downstream 53607 56897082 ~ 56897577 (+)
G1883408 NA non-coding downstream 58682 56902157 ~ 56903028 (+)
G1883412 NA non-coding downstream 80832 56924307 ~ 56935226 (+)
G1883413 NA non-coding downstream 87803 56931278 ~ 56932341 (+)
G1883414 NA non-coding downstream 91956 56935431 ~ 56935773 (+)
G1882831 NA other upstream 285800 56533617 ~ 56543256 (+)
G1882830 NA other upstream 290573 56529795 ~ 56538483 (+)
G1881371 NA other upstream 1825384 55002782 ~ 55003672 (+)
G1879958 NA other upstream 2973326 53851671 ~ 53855730 (+)
G1883457 NA other downstream 168562 57012037 ~ 57013218 (+)
G1885587 NA other downstream 2018739 58862214 ~ 58864502 (+)
G1886557 NA other downstream 2880789 59724264 ~ 59736661 (+)
G1886558 NA other downstream 2884271 59727746 ~ 59736471 (+)
G1886560 NA other downstream 2906243 59749718 ~ 59786095 (+)

Expression



Co-expression Network