LOC110503039 (LOC106610997)


Basic Information

Item Value
gene id LOC110503039
gene name LOC106610997
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 56907480 ~ 57068071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960871.1
ATTTTGTGAAATGTGACGCTTGAGCCGCGAACCCATTGATAAATTCGCCTTCTGCCATGACCGCACGTATCACTACCGCAAGCAACTCCGTGCTGGAGACAGACACCAGTTCTTCAGATTCACAGTCTGCAGAGCAGCTGACGAGATCGTCACTTTTCAACGGACCGTTATTTTTTATTCTCGATCCACTACCCCTGTCGTTTTCCCGTGTTCATAGTGCTAgacttcagaaagtactcagaaCTGTTGGTTTTTGTAACTTTTTCTGTAGCACTGAAACCTTGAAGggctttgttttgttttatataCTTCTCCCATAGTGTTGTTCCTCTCAAGGATGCGCCAAAGGATGGGTCATGTTCTGAATCAGAAGAGGAGCCTTTTGGATGTTCTCTGCGTGTATTTGTCTGTTTCTGTAGTTCACTCCTACAACATTGACTTAAAACATGCTGTTGTGTTCCGTGGACCTGACTCGAGTTTCTTTGGATACTCTGTTCTGGAGCACTATCACGACAATACGCGCTGGGTTCTGGTAGGGGCTCCCAAGGCCAACTCTTCCTACAGCAGCTCACTTCACACCCCGGGAGCCGTGTTCAAGTGCCGTGTCCACAGCAACCCAGAGAGACGCTGCACGGAGATGAACCTGGGCCGAGGGAATAAGCCCCGGGAGTCTTGTGGGAAGACATGCCAGGGAGACAGGGATGATGAGTGGATGGGGGTCAGCCTCGCCCGGCAGGACAAACCCAATGGCAAAATACTGGCCTGTGCCCACCGTTGGAAGAATGTCTTCTATGACTCTGAGCTCATCCTTCCCCATGGTTACTGTTCCATCATCCCTCCTACGCTACAGGGCCGGACCCAAGCCCTCATCCCCTGCTACGAAGACTATAAGCAGAAGTATGGGGAAGAGCACGGCTCGTGCCAAGCGGGGATAGCAGGCGTTTTTACTGAGGAGCTGGTGGTGATGGGAGCTCCAGGATCATACTACTGGACAGGAACAGTTAAGGTCTACAACCTGACCTCCAACACCTTCTACAACCCCAACAAAGAAGACATTGACTCACACAGATACAGTTATCTAGGCTATGCCGTGACTACTGGACACTTCTCCTCTCCTAACATCATAGATGTGGCtgcaggagctccacaacacAGTGGAGGGGGGAAAGTTTACATTTTCAGAATCAATGGAGTGTCTTTGGTGAAGATCTTTCAAGCCTCGGGGACAATGATGGGCTCTTACTTTGGCTCCTCATTATGTGGAGTTGACCTGAACAGGGACGGCCTTTCGGACCTGCTGGTTGGAGCGCCCATGCACAGCACGCTACGGGACGAGGGACAGGTCTCTGTCTACCTCAGCAAAGGCAACGGTGTGATGGAGGAAGTAGGACTCTTAAATGGTGATAATGCCTAcagtgcacactttggagagtgCATCACTGCAATCGGAGACATTGATGACGATGGGTACCAAGatGTGGCCATAGGAGCACCCAAAGAAGATGACTACGGTGGAGCGGTTTACATTTACCATGGTGATGCCACAGGAATCGTCACCAAATATTCTATGAGAGTGTCTGGACAGAGCATTAACCCCACCCTCCAGATGTTCGGCCAATCAATCTCTGGCAATGTGGACATGGACAGCAATGGATATCCAGATATTACCATTGGTGCTTTTATGGCTGATAGCGTGGTGTTATTGAGGTCCCGGCCGGTGATCACTGTGGACGTGTCTATCTACCTGCCTGTCTCCATCAACATCTCTGTGCCTCAGTGTCACGAGGGACCACAACACCTCAACTGTTTCAACGCAAGAGTCTGCCTGCTCTTCAGAGGAAAACACCTGCCAGGACAGATAGagtTGTTGTATAACCTGACAGCTGATgtggagaagaggcagaggagccAGTCTTCCAGAGTTTACTTTATTCAGAACGGAGCCCAGATCAGCTTAATGAGCAACGAGCTCAGTCTGGACATCAACAGAGAGGATTGCCAACAGTACACTGCATATGTTAAGAAGGACGTGAAAGACGTATTCACAGCCATCACCTTTGAGGTGGCCTACACCCTGGGGAAGCATGTGGTGAACGGTCACCTGGACAAAGACCTGCCTGCTCTTACACCTGTACTGCGCTGGAGGAAAGGAGACAAGATGGCAGCAAAGAATGAGACATGGTTCGAGAGGAACTGCCTGTCTGATGACTGTGCTGCTGACCTGAGACTCCATGGGAAACTACTGCTTTCTGGGCTCCACGTGCGGTCCCATCTGGCCCTAGGAGGAGTGAGGAATGTCTCTCTGAACGTGACCATCTCCAATGCAGGGGACGATGCCTACGACACCAACATCTACTTCAACTTCTCCAGAGATGTCTTCTATATCAACTACTGGCAGAAGGAAGAGAAGGGTATTTCCTGTGGTCTTGTTGATTTAGACTTCCTCCAATGCAGCGTGGGGTTTCCCTTCATGAGAGTAAAGACTAAGTATCATCTTGCAGTGATCTTCGACACAAGTCGGCTTTCAGGGGAAAATGAGACATTGCAGTTTTTAGTTCATGCAAAAAGTGCCAACCCTGAGCATAGGCTGTTGGACAACAAGTTGGATCTGTCTATCCCACTGGTCCATGAGGTGGACACAGCTATCACTGGTTTAGTGACTCCAACATCCTTTCTGTATGGGAACTCCATCGTTGCCTCTCGCTTCATCCAGCTGGAGGACATGGAGTGTAACTTCCAGCCTTTAAACTTCACCTTTCAGGTGATCAACAACGGCCCCAGCAGGTTACCTGGCTCCATAGTGGACATCAGGATCCCAAACCGACTGGCTGGCAATGGGGCCGACATGTTCCACATCATGGACATACAGGTGGCGGAGGGGCAAGGGAACTGCACCCCTCATAGGAACCCCCAGCCCTGTTCCATCTCCCAGGACAGAGAGAGTATCTTCCACACCATCTTTGCCTTCTTCACCAAGTCTGGACGCAGGGTCCTGGACTGTGACCGGCCAGGGAGAGCATGTTTAACCATCTCATGTACTCTGGGCTCCCAGTCCAAAGAGGAAGTTGTCAGTATACATGTGAAACTTCTACTAAACACAGAGATACTGAAGAGGGACAGCTCATCGCTGATCCAGTTCGTGACTAGGGGTAATGTGAGAGTGGACGGGAGGGCCATAGAGGTACCGCAGGGGCTATCAGAAGACACTTCACTGGTGTTCGAGGCGCTCCACAGCCAGGAGCCAAGAGGATATGTTGTTGGTTGGATCATTGCCATCAGCCTGCTGGTGGGAATACTCATCTTCCTACTGCTGGCTGTGCTGCTCtggaagATGGGTTTCTTCCGCCGGCGCTACCGGGAGATCATCGAGGCCGAGAAAAACAGGAAGGACAGAGCTGACGAGAGCTGGGATTGGGTGGAAAAGAACCACTGAGGGAAAGAGAAGACAATGAGAGCACAGGGTGTGGGGATTGGGTCAATGGAGGATCCAATGACCCAGCCAGCCAATCAGGAATAAGGGCCCTTCAATCTTCCATATCTGGAAGAGAAATAAATGGTCTCTGGATTTTTTGGAGGGAGACTTTTTTTTGTGCGTGGGAGACTGGGGATCGAGGGAACTAACAGGCAGAAATCTGAGGTGGAGGTTGGTGTCGCTCGCTCGGGTCAGATTCATTAAGACCCTAATTCAGTGCAACGGAAATTGGAAATGAGTGTTTCTTATTGAACAAACCCAAGGATTACATTCCTGTTTGTCTGTTTTCTTTTGTTTGATGTCAAATTAATACAACACTCGCAATAGAATTCAATTAGTCCCTATGGAGGAAACTCCCTGCCAACGGAAATAAACAAAATTGAACTGTTAAAGAAACAACTGGCCTGTTCAGGATGCTGTAATGTTCCAGAACATTCAGATGTAAATATATTGTGCAGAACGGACATGATGCGTTAGCTCTAAACATTctatttctatctgcaatgttctGAGTGTTTCACATCACTGAATACACCCAAGGAGATAGACGTCCTTGGACAGGATGTGGCAATGACGCGGATATTATCGGATGGGACAACAAAAACCCTCAGGGCTCTGTTTTAATAGTAgtgaacatttatttttatacatATTATAGCCATATTGTATTAAATTGGGGCTTTGTGAAATGGTTGGTTCGAGTTTTTGAAGTCTAATGTAAGAAtatctatgtttttttttaaagcactgATGTCCGAGTTTATGCTATATTTCAGCGTCGTTCCTTTAGTTTCCAGGGCAAAGATACAGCATGTTATGTTTAGTAAATTAGTCCATTTGTATATTATCCAGTATCGTGAGACGTGGATTTTCTGGAGTGTGAAAGATTGTGTCTTTTTAACTCTGTACTGTTTCCTGCTCACAAATATCTCTTTAATATCTCAcacatctccctctcctttcGATAGATAGCTATATGGGCAACCAGCCAAGCAAGTCCTATGAAGGCCCACAGAAATACAATTACAGGAGCAgacattcccattcaagtcaaaaTTATATTTCTGTGTGTAGACCTTCCATTCACCATAAACAGAGATATAATTTTTGTCACACATCGAAGTTGTCCCTATCATGAAGAAATGCTGATAACCAATCAAAAGAGCTCTATGAAATGTTTAATtgattatacagtgcattcggaaagtgttcagacctcttgactttttccacattttgttacatttacagccttattctaaaattgattaaataaaatcttcagcaatctacacacaataccccataatg

Function

NR:

description
PREDICTED: integrin alpha-9-like

GO: NA

KEGG:

id description
K06585 ITGA9; integrin alpha 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960871.1 True 4783 mRNA 0.47 28 56907480 57068071

Neighbor

gene id symbol gene type direction distance location
LOC110503005 LOC106611007 coding downstream 20837 56856580 ~ 56886643 (-)
LOC110503002 LOC106610976 coding downstream 127236 56760079 ~ 56780244 (-)
LOC110503038 NA coding downstream 847885 56044331 ~ 56059595 (-)
LOC110502998 LOC106610959 coding downstream 922628 55981267 ~ 55984852 (-)
LOC110502996 LOC107666370 coding downstream 1703287 55190470 ~ 55204193 (-)
LOC110503007 LOC106586972 coding upstream 3256 57071327 ~ 57116725 (-)
LOC118943925 NA coding upstream 40989 57108428 ~ 57110865 (-)
LOC110503010 LOC106590975 coding upstream 271456 57339527 ~ 57381651 (-)
LOC110503011 LOC106611131 coding upstream 321539 57389610 ~ 57433456 (-)
LOC110503041 LOC106579580 coding upstream 521930 57590001 ~ 57616121 (-)
G1883574 NA non-coding downstream 2062 56903371 ~ 56905418 (-)
G1883397 NA non-coding downstream 15762 56891414 ~ 56891718 (-)
G1883396 NA non-coding downstream 17321 56889929 ~ 56890159 (-)
G1883392 NA non-coding downstream 18708 56888555 ~ 56888772 (-)
G1883306 NA non-coding downstream 132465 56732793 ~ 56775015 (-)
G1883676 NA non-coding upstream 49424 57117495 ~ 57118395 (-)
G1883892 NA non-coding upstream 136249 57204320 ~ 57204634 (-)
G1883898 NA non-coding upstream 146186 57214257 ~ 57214498 (-)
G1883904 LOC107662719 non-coding upstream 161138 57229209 ~ 57229477 (-)
G1883244 NA other downstream 197592 56644007 ~ 56709888 (-)
G1883219 NA other downstream 296840 56606006 ~ 56610640 (-)
G1881414 NA other downstream 1903856 55002766 ~ 55003624 (-)
G1880780 NA other downstream 2660794 54244782 ~ 54246686 (-)
LOC110503036 LOC106610742 other downstream 2833531 54039018 ~ 54073953 (-)
G1884227 NA other upstream 666286 57734357 ~ 57735498 (-)
G1885150 NA other upstream 1166148 58234219 ~ 58242567 (-)
G1885863 NA other upstream 2021602 59089673 ~ 59090564 (-)

Expression


Co-expression Network