col9a1b (LOC106560234)


Basic Information

Item Value
gene id col9a1b
gene name LOC106560234
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 60325289 ~ 60371061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959918.1
CTAAAGGCCTACTGAATGGGTGGATTAAAAAGGGAGGTCCTCCTCTACTTGTTATGCCATGTGATCCCACAATGCCTCAGCACAGGCCTTCACTCGCAGAGGGTGTATTTTTCCTCTGGAGCTGACATTCAAACTGAGCAGGGCCTGTGTCCTCCGATTAAGGTCGGAGAGGATGGTTTCCCAGGTTTTTATATCATGTCCCAGTTTCACATTGCTGAGCTGGCCAGAAGAGGAACTGTTCAAAAGGGGCCTGGATCAACCTCTCAGCATGTTGCCTACAAAATAGGGCCAGCATTCAACTTCAGAATTAACACAAGATCAGCGTATCCCCTTGGACTACCGGTTGAATTTGCGTTTGTGACAGTTTTACGAATGAACGGCAGTACCGTAACCAAGAACTGGAATATTTGGCAAATGCTAGATTTGAACGGCGAAGAGCAGCTTGCCGTTAGACTGAACGGAGAATCGCTCTCTCTTGAATTCACCTTCACAACATTGAATAAAACACGAGAGACGGCCGTTTTCCCTTTCCTACCGTTCCTCTTCAACTCTCAATGGCACAACATCTTACTGAAAGTCAGCAAGCGTTCTGTAACTCTGTTCGTGGATTGCATTATGGTGGACTCTCAGAACACACCCCAGAGAGGTATAGTCAACCTGGATGGATACACGTTGATTGGAAAGCTGAAGGATAACCCCGTTTTAGCAGTGCCATTTGAACTCCAATCGATGCACATTGATTGTGATGTGGGGCGACCACAGACCTGCAATGACCTACCAGCCAGGACGTCGGTAAGAACCATtgacaaaacagactgcaaccACGGTCAAATTATCAGACTTAATTATCAAAATAGCCAGTACAGAGGCTGGTATTATCTAGTCCAGGCAACCATTGTAAATAAACAACATGAAAGATGCTTTGATGCCTATGGTACCTCTGGCGGTTCAGTTGGTAGAAACGGATTCAGCCGGGTGACTTTTTTTGTCGGGGTCCGTCAACCCAACTCATCCAAGAAAAAGGAAAACATTTTTACCCGTTCTTGCTGTCCGGGAGAGGGAAGAGCCGGAGAGACCATGGCTCACGGGCAACTTTTTTGGGTACTTTTGGTGCAGATTGTCCTTATTTGCTCCACACAGAGGGCCTCGGGCCCCGTCGGCCCTCCAGGACCCGCAGGTGTCCCAGGAATTGATGGTGTCGCTGGTGAGAGGGGAGACGACGGAGAGGATGGCCCTGCTGGTCCTGATGGAGATGCAGGTAAACTAGGCTCAGCCGGGTTGCCAGGTGTGCCCGGGGCTGATGGTTTGACTGGTCCTACTGGAGACGAAGGTCCCGATGGTCCCCTTGGACAGAAAGGTGAACCCGGGAAACCAGGACCTCGTGGACTAGCTGGCGTTGGAGACGATGGACCCCCTGGACCCCCGGGGCCAGGAGGACTTCCAGGTGATTTGGGAAAAGGTGGACCCCCTGGTGCTATGGGAGTCAGAGGACCAACAGGACCTGGTGGATCAGCAGGGCCGAgaGGTGCAGCAGGGATGCAGGATTTGAGTGCCGAGCTGTGCCCTGGTGCCTGTCCACCTGGGACACCTGGTCATCCCGGCCTCCCTGGCATGAAGGGTCACAAAGGAGTaaaaggggaaggaggagagccTGGGAAACAAGGGCACAAGggtgaAGAGGGTGACCAGGGAACCACAGGGGACCTCGGATCCCAGGGCCCAACGGGTCCTCAGGGAATCAGAGGCTCCACTGGAATGATGGGGCCCAAAGGTGGACTGGGAGCACGAGGACATGATGGAGATCCAGGTCCCCAGGGTGTTGAAGGAGCCACTGGTGACCAAGGCCAGAGGGGCGTGATGGGCGAGTCTGGTCCTAAAGGTGATGAGGGATCTCAAGGTGGAAGAGGAATCACAGGTCTTCCTGGGCCCAAGGGAAAGGGTGGTTTGTCAGGAGTAGATGGCCGTGAAGGTATTCCTGGATTGCCAGGTGGAAAGGGCACCATTGGCAAGGCCGGGTCTCCAGGGGAGGTGGGGCTTCAGGGACTTCCTGGATTACCTGGTTCTCCTGGCTCTAAAGGAACTGGTGGAGAGAAGGGTAGCTCTGGAGAGGCAGGTCTTCTTGGAACAATAGGATCTGCTGGTAAAACAGGAGAGCAAGGCAAAGCAGGAGGTCTAGGACCCATTGGACCCATTGGCGGACCAGGAGACAGCGGAGTACAAGGACCAGCCGGTCCACCGGGCAAACCAGGGGCCAGGGGACCAAAAGGGGATCTTGGTCTTCCTGGTGTTCCCGGACCCCCAGGCCTCCccggagtgaagggagagaggGGAGAAGCTGGCGAGGGAGGACCTAAAGGGGAGCAGgggggacaAGGTTCTGAGGGAACCTCTGGAGACAAAGGAGATGTTGGTGACCAAGGGGAAGCTGGACCCAAAGGAGTGgttgGAAACCCAGGAGAGCCTGGTAACAGAGGGCCAGAGGGTAGCAGAGGGCAGCCTGGCATCGAGGGCCCAGCTGGTACTCCTGGACCACGTGGCATGCAGGGCAACAGGGGCGCACCAGGAATCAGGGGGTCACAGGGACCGGCGGGTAAAGAACCAAGCGATCAACACATCAGACAAGTCTGCATGAGAGTTATGCAAGAGCAGCTAGCCCAGTTGGCTGCCAGTCTAAGGAGGCCGGAGTCTGGAGCAGCGGGCCTGCCTGGTAAGCCAGGGCCTCCTGGTCCTGCCGGACCCCCAGGGGACAGTGGCTTCCCTGGGCAGGCTGGAGCAAGAGGACTGCCTGGCCTCAAAGGACCTCCAGGACTCCTAGGACTCAAAGGACCCAAAGGTGAATTGGGCGACAGAGGAGACCGAGGTCCCACGGTGCGAGGGGCCAAGGGCCAGCCAGGACCTCCCGGTCTACCAGGTGAGCCCGGAAAGCCTGGTTACGGCCAGGAGGGACGTGACGGCGAGAGAGGACCTCCAGGTGTTCCTGGCCAGGCTGGTGTACCTGGGCCTCCTGGTAATGCTGGCCCCAACGGCTACTGCGACCCATCGTCCTGCAACCTCAGACCGGGGGACATTGACACCAGCATCAAGGGCCCGGAGGGAACTAGAAACTAGAGCCACCacccagtggaggctggtgtcaCTTTAAATCTGAGGACTGGATGTAATGGCtgtaatggaatgaatggaaaAGTTTCAAACACCTTGGAttctgttccatttattccattagAGCCATCACTATGACCCATCCCCCCTTCACCAGCTTCCACTGCCCAACACCcagagaggggtagagacagagacagagactaagATGGCAGATGGACAGCTCTCCCACCCCAACCCTGGGAGCACACAACATCCTCACAGCCTCTCTACTCTGAAGGCTGTTGCTGTAAAGTGGTCCATTCTAACGTATCTGCAGTGTTTTGTGAGAGTGTTCTGTGCTAGCCAGATCTCTATCGGATATGAAGGAGTCTTCCACTTCCACAAATGCGAAACAAAACTAAGTATTTTGTTGCAAAACAATAATAATCCTGAACCTGTTTGGACGTGTAACAGTTTTTTACATGACAGATTTTatttttcttttgttgttttcAGAAGTGGGTGCTCTATTTTAAGATAGTCATGTTTTGAAGACTATATTTGTTTTTATTCCACCGTCCCTGTAAACCTAGATGTCCTTAATAACCACCAGACAAATATCTGTCCTTAATAACCACCGGACAATTCACCTGTCCTTAATAACCACCAGACAAATTACCTGTCCTTAATAACCACCATACAATTCACCTGTCCTTAATAACCACCAGACAAATTACCTGTCCTTAATAACCACCATACAATTTTCCTGTCCTTAATAACCACCAGACAATTCACCTGTCCTTAATAACCACCAGACCACACCTGTCCTTAATAACCACCAGACAATAACCTGTCCTTAATAACCACCAGACAATCACCTGTCCTTAATAACCACCAGACAACCACCTGTCCTTAATAACCACCAGACAATTACCTGTCCTTAATAACCACCAGACAATCACCTGTCCTTAATAACCACCAGACAATTCACCTGTCCTTAATAACCATCAGACAATCACCTGTCCTTAATAACCACCAGACAATTCACCTGTCCTTAATAACCACCAGACAAGCACCTGTCCTTAATAACCACCAGACAATTCACCTGTCCTTAATAACCACCAGACAAATCAACTGTCCTTAATAACCACCAGACCACACCTGTCCTTAATAACCACCAGACCACACCTGTCCTTAATAACCACCAGACAAACACCTGTCCTTTATAACCACCAGACATGCACCTGTCCTTATTAACCACCAGACATTTTACCTGTCCTTATTAACCATCTGGCTGTATTTGTAtgttccctttcctcctctcctctcactgaaACAGCTGTATACTGAAGCCAACATGTTGATTTCAGCAGCGGCTCCATCCACATCAAATCACGCTAATTCCTCCCCAATAAAGTAAAACCATAAAGCAATACCAGGATTGCCTTTAGCCCaaagtgtattttttttgtatttgtaatgTACTGCATCATGTTCTATATTGAAGTATCAATTACCAAAGATAGACCTGGTGAAAAACAGTGATATCAGTTTGTACAGAATGTACCTGGGGTATTTCCAGCCCCCTGCTTTCCTTCCAGAAATCTAAATAAAGAGATAGAAGATAGGACTGACACCAAGCCACACTGACTGACGGACCTTCCATATGCGCTGTACATCTCTGTAAATTGTTTTCAATTGTGGTTAATTATATTTCCTACAAAAAATAACTATCCTAATGATTGAATGTGAGGTTTGTTCTCATTGTACAGTGTGAGGAGGATTCTGAGAGATGATTATTTTGAAAATAAATGGAATATTCCCTTTCACAGTA

Function

NR:

description
collagen alpha-1(IX) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959918.1 True 4918 mRNA 0.50 38 60325289 60371061

Neighbor

gene id symbol gene type direction distance location
slc35f3b slc35f3 coding upstream 151160 60012705 ~ 60174129 (+)
LOC110503042 kcnk1 coding upstream 352755 59962215 ~ 59972534 (+)
LOC110503015 LOC106589751 coding upstream 458514 59847111 ~ 59866775 (+)
LOC110503016 LOC106611257 coding upstream 508868 59703394 ~ 59816421 (+)
LOC118943836 NA coding upstream 743414 59581099 ~ 59581875 (+)
LOC110516668 lmbrd1 coding downstream 275005 60646066 ~ 60907352 (+)
LOC118943928 LOC106577473 coding downstream 1122596 61493657 ~ 61522049 (+)
LOC118943929 LOC106577282 coding downstream 1170091 61541152 ~ 61555170 (+)
LOC110532895 LOC106577282 coding downstream 1186950 61558011 ~ 61575674 (+)
LOC110522442 LOC106577282 coding downstream 1234963 61606024 ~ 61614271 (+)
G1887014 NA non-coding upstream 15425 60308013 ~ 60309864 (+)
G1887005 NA non-coding upstream 29178 60295341 ~ 60296111 (+)
G1886970 LOC106613623 non-coding upstream 90174 60232936 ~ 60235115 (+)
G1886969 NA non-coding upstream 93269 60231734 ~ 60232020 (+)
G1886967 NA non-coding upstream 105669 60219294 ~ 60219620 (+)
G1887073 NA non-coding downstream 96805 60467866 ~ 60468690 (+)
G1887108 NA non-coding downstream 175257 60546318 ~ 60546736 (+)
G1887289 NA non-coding downstream 256720 60627781 ~ 60628107 (+)
G1887291 NA non-coding downstream 258069 60629130 ~ 60629444 (+)
G1887295 NA non-coding downstream 260861 60631922 ~ 60632223 (+)
G1886561 NA other upstream 537300 59783986 ~ 59787989 (+)
G1886560 NA other upstream 539194 59749718 ~ 59786095 (+)
G1886557 NA other upstream 588628 59724264 ~ 59736661 (+)
G1886558 NA other upstream 588818 59727746 ~ 59736471 (+)
G1887835 NA other downstream 905714 61276775 ~ 61277763 (+)
G1888298 NA other downstream 1555685 61926746 ~ 61927857 (+)
G1888544 NA other downstream 2193464 62564525 ~ 62565083 (+)

Expression


Co-expression Network