LOC110516668 (lmbrd1)


Basic Information

Item Value
gene id LOC110516668
gene name lmbrd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 60646066 ~ 60907352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960939.1
tctgtctctctgtttggtaACTTTGTATCCACTGCATCGCCCCTTCCGTCAATAGAAGCACATGGTCCGTGTTTGTTGCAGGAAGTGAAGATGGCGGACCAGTCGTTGCTATCTGAGTCTGCTCTCGGGTGGTCTATATTCGCCCTTGTATTTTTGGTGATCCTGTCCTTCTGTTGGGTCTACATCAGGAAGTACCAGAGCCGCCAAGAGAGTGAGGTCATCTCAACCATCACTGCAATATGCGCATTGGCCATTGCACTGATAACCTCTGCACTTCTTCCAGTGGATATATTCCTAGTGTCTTACATGAAGCACCCCAACGGTACTTACAAGGAGTGGGCAGAAAACAATGAGACACGAGGCCAAATCGAAGACACTGTGCTGTATGCTTATTACTcactgtactctctcctcctgttctgTGTCTTCCTGTGGATCCCCTTTGTCTACTTCTATTATGAGGAGAAGGATGATGACAACATCAACAAGTGTTCACAAGTGAAAAATGCTCTGAAATACACAATTGGATTCATCATCGTCTGTGCAGCACTGCTATTAATTGGGGCCTTCGTTCCTCTTGAAGCCCCACCTAATCAGAATGGTACCCAGTGGGAAAAGATGCAGTATCTGTTTGAGGAGCTGGGGAACAACCaTGGTGTACCAGCCCTGTCTTTCTCCATCAGCTCCTTGACCTTGATTGGCATGTTGGCAGTGATCACttacacgGCGTATGGTATGTCAGTGCTGCCGTTGAACCTGATTAAAGGGACACGCAGTGTGGTGTACGAGCGTCTGGAGAACACTGAAGATATTGAAGAGGTTGAACACCAGATGGAAAATATCAAAGCCAAGTGTGAGGACGGGCGTCCTCTGTCATCGCGGGACCGTCGTAACCTCCAGGAGTTTGAGGACAAGCTACAGGTGCTCCAGAGGAGGGGCAGGCACCTGGAGATAGCAGAGAGTCACTGCTGCACCAAGGTTGGATCTGCCCTCAGACCACTCAagattcTGCTGGGAATTTTCTTCATCCTGTTCGCTCTGCTGTTTGTTGTTGCTCTGTTCATTTCAAAtTTGGACAAAGCTCTTCACTCTGCTGGCATCAGTTCTGGCTTCATGGTGTTTGGCACCAACCTGACCAACCCTCTGAATGAACTCCTGCTGACTCTACAGCCTGTGTTCCCGTTGGATTATGTCCTGATCACTGTCATCACCATGTACTTTGTGTTCACCTCCATGGCCGGCATCAGGAACTTGGGCATCTGGTTCTTCTGGATACGGCTGTACAAGATCAGACCCAAGAGAACCCGTCCCCaggccctcctcttcctctgcatgATTCTACTGCTGATTGTCCTTCACACCAGCTTCATGATCTACAGCCTGGCCCCGCAGTACGTCATGTACGGGAGCCAGAACTACCTGCTGCAGGTGACCCCAGGCTGGAGCCCGATGCCACCAGAGAATAATACCACTTGGACTACCAAGACCTGTGATGCCGACGCACCTCAAGACGAATGCACAGTGACGAGGTCGTACCTATTCCTCCACAAGTTCTGGTTCTTCAGTACCATCTACTACTTTGGTAACTGGGTGTTTATCGGGGTTTTCCTCATCGGCCTGGTGGTGTCATGTTGTAAGGGGAAGAAATCAGTGATCGAAGGCGAGGTGGAGGCAGATGACTCTGACATGAGTGAAGACGAATATGTCCACTGACAAGACCACAGCctgccagacctgggttcaaatactatttgaaatgttttaaatacttttgagcatttgctttagcctgcctgggaGTGCCGGGTGGGCGGGGTTTGCATGTTCTGGACTTTTCTATTGGTTCACCTGCAAAAGGCAAGCTTAATCAAATACAATTGAAGtattttaaatcattttaaacagtgtgccctaatgaatatggCCCAGGTCTGCTACCTGCATGGACcaggagacatttaaacaggATTGGTTTCTGTTTCAGCTGGTTTGCAATAACGTAAGAATTGAACATTTGGATTGTTCATACAAGGCAGTAAAACTTTAATTTGAACTGTTGTTTTCTGGTTTCTGCCTGAGATTGGTTAATATTCCACAGCGTTGTGTTGATActgatgtattattattattagaacaGGAGAGGGTGATTGTGAGGTTGCTTTTTTCTATTAGGGCaactttttgtttttttgttcagtCAAGTGTCTTTGTTCAAAGCAGTATGTAAAACCctgattgcatcccaaatggcaccctatttcaaatatagtgcacttcttttgaccaaagccctattggaccctggtcaaaagtagtgcactatatagggaatagtgttccatttgagATGCAGCCCCTCTTTGTATTACTATGGGTATGTGCCTGTTGTTTCAAATGTCATCTCCACCAATTCCATGTTTTTATGTTTCCAAAAAGAAAGATTTAgtgttgcaaaattctggtataTTTTCCAAAATGAGAGGATTCTGAATTTCCTGCTTATTTCCTTCACTATTCTGGGAATCTTCAAATGGGTAATAAAAAGACAGAAAAACCAGGTGATTTGTGGAAAGTTCCCAACATTTTCTAACCCTAAGAAAGATCCCTGGTTGAGAACCAAACGGTGAGTTATTCAACAAGCCTGTGGTACTGGATGTTTTGGATCCTGAAAAGACAAGATGTTGTTGGGGAAACATAGTCCAGGATTACTTTTTTATTTGAACTCAGCACATTTTTGTTGACATGTACATTTCTGTAATATATGGCTGGATAAATGTTTATTTTAGCCTTTAACAGATGTATTATTTTTAAGATGACTAACTTAGCACATTCAGCATGTTAACTTACAGCAACAAATAGGGACTTGTATTTGATACCATATTGATAATGCACATTGCTGAGTTAAAATATATATTATCTTATCCCTGATTTTGGTCGTGTTTGGTTGGGCTTAGCTTGACTAACTGTTATTGCGTTGATGAATTGATTTGCTGTAAAGTTCTCTGAACATGAACTGAGCATAATATCACTGGACTACTGATCACAATGTCAATTTACGTTATGAATTTGGAATAAAATATGAATTCTGAATTGATTATTGCTATGTTTATGTTGTTAATCTATCAATTTCTAACGTTAATTCAGGGATTGCTTTGGACCTTGAACTTGGGGTTGGCGTAGCCATTTGTTTTTCAAGGACTAGACATTAGTGATATTTATTGTGTCCTCTTTAAAACTGTTGATAATAAAGAGGCTGGCCCATCTTA
>XM_036960940.1
tctgtctctctgtttggtaACTTTGTATCCACTGCATCGCCCCTTCCGTCAATAGAAGCACATGGTCCGTGTTTGTTGCAGGAAGTGAAGATGGCGGACCAGTCGTTGCTATCTGAGTCTGCTCTCGGGTGGTCTATATTCGCCCTTGTATTTTTGGTGATCCTGTCCTTCTGTTGGGTCTACATCAGGAAGTACCAGAGCCGCCAAGAGAGTGAGGTCATCTCAACCATCACTGCAATATGCGCATTGGCCATTGCACTGATAACCTCTGCACTTCTTCCAGTGGATATATTCCTAGTGTCTTACATGAAGCACCCCAACGGTACTTACAAGGAGTGGGCAGAAAACAATGAGACACGAGGCCAAATCGAAGACACTGTGCTGTATGCTTATTACTcactgtactctctcctcctgttctgTGTCTTCCTGTGGATCCCCTTTGTCTACTTCTATTATGAGGAGAAGGATGATGACAACATCAACAAGTGTTCACAAGTGAAAAATGCTCTGAAATACACAATTGGATTCATCATCGTCTGTGCAGCACTGCTATTAATTGGGGCCTTCGTTCCTCTTGAAGCCCCACCTAATCAGAATGGTACCCAGTGGGAAAAGATGCAGTATCTGTTTGAGGAGCTGGGGAACAACCaTGGTGTACCAGCCCTGTCTTTCTCCATCAGCTCCTTGACCTTGATTGGCATGTTGGCAGTGATCACttacacgGCGTATGGTATGTCAGTGCTGCCGTTGAACCTGATTAAAGGGACACGCAGTGTGGTGTACGAGCGTCTGGAGAACACTGAAGATATTGAAGAGGTTGAACACCAGATGGAAAATATCAAAGCCAAGTGTGAGGACGGGCGTCCTCTGTCATCGCGGGACCGTCGTAACCTCCAGGAGTTTGAGGACAAGCTACAGGTGCTCCAGAGGAGGGGCAGGCACCTGGAGATAGCAGAGAGTCACTGCTGCACCAAGGTTGGATCTGCCCTCAGACCACTCAagattcTGCTGGGAATTTTCTTCATCCTGTTCGCTCTGCTGTTTGTTGTTGCTCTGTTCATTTCAAAtTTGGACAAAGCTCTTCACTCTGCTGGCATCAGTTCTGGCTTCATGGTGTTTGGCACCAACCTGACCAACCCTCTGAATGAACTCCTGCTGACTCTACAGCCTGTGTTCCCGTTGGATTATGTCCTGATCACTGTCATCACCATGTACTTTGTGTTCACCTCCATGGCCGGCATCAGGAACTTGGGCATCTGGTTCTTCTGGATACGGCTGTACAAGATCAGACCCAAGAGAACCCGTCCCCaggccctcctcttcctctgcatgATTCTACTGCTGATTGTCCTTCACACCAGCTTCATGATCTACAGCCTGGCCCCGCAGTACGTCATGTACGGGAGCCAGAACTACCTGCTGCAGAGCCCGATGCCACCAGAGAATAATACCACTTGGACTACCAAGACCTGTGATGCCGACGCACCTCAAGACGAATGCACAGTGACGAGGTCGTACCTATTCCTCCACAAGTTCTGGTTCTTCAGTACCATCTACTACTTTGGTAACTGGGTGTTTATCGGGGTTTTCCTCATCGGCCTGGTGGTGTCATGTTGTAAGGGGAAGAAATCAGTGATCGAAGGCGAGGTGGAGGCAGATGACTCTGACATGAGTGAAGACGAATATGTCCACTGACAAGACCACAGCctgccagacctgggttcaaatactatttgaaatgttttaaatacttttgagcatttgctttagcctgcctgggaGTGCCGGGTGGGCGGGGTTTGCATGTTCTGGACTTTTCTATTGGTTCACCTGCAAAAGGCAAGCTTAATCAAATACAATTGAAGtattttaaatcattttaaacagtgtgccctaatgaatatggCCCAGGTCTGCTACCTGCATGGACcaggagacatttaaacaggATTGGTTTCTGTTTCAGCTGGTTTGCAATAACGTAAGAATTGAACATTTGGATTGTTCATACAAGGCAGTAAAACTTTAATTTGAACTGTTGTTTTCTGGTTTCTGCCTGAGATTGGTTAATATTCCACAGCGTTGTGTTGATActgatgtattattattattagaacaGGAGAGGGTGATTGTGAGGTTGCTTTTTTCTATTAGGGCaactttttgtttttttgttcagtCAAGTGTCTTTGTTCAAAGCAGTATGTAAAACCctgattgcatcccaaatggcaccctatttcaaatatagtgcacttcttttgaccaaagccctattggaccctggtcaaaagtagtgcactatatagggaatagtgttccatttgagATGCAGCCCCTCTTTGTATTACTATGGGTATGTGCCTGTTGTTTCAAATGTCATCTCCACCAATTCCATGTTTTTATGTTTCCAAAAAGAAAGATTTAgtgttgcaaaattctggtataTTTTCCAAAATGAGAGGATTCTGAATTTCCTGCTTATTTCCTTCACTATTCTGGGAATCTTCAAATGGGTAATAAAAAGACAGAAAAACCAGGTGATTTGTGGAAAGTTCCCAACATTTTCTAACCCTAAGAAAGATCCCTGGTTGAGAACCAAACGGTGAGTTATTCAACAAGCCTGTGGTACTGGATGTTTTGGATCCTGAAAAGACAAGATGTTGTTGGGGAAACATAGTCCAGGATTACTTTTTTATTTGAACTCAGCACATTTTTGTTGACATGTACATTTCTGTAATATATGGCTGGATAAATGTTTATTTTAGCCTTTAACAGATGTATTATTTTTAAGATGACTAACTTAGCACATTCAGCATGTTAACTTACAGCAACAAATAGGGACTTGTATTTGATACCATATTGATAATGCACATTGCTGAGTTAAAATATATATTATCTTATCCCTGATTTTGGTCGTGTTTGGTTGGGCTTAGCTTGACTAACTGTTATTGCGTTGATGAATTGATTTGCTGTAAAGTTCTCTGAACATGAACTGAGCATAATATCACTGGACTACTGATCACAATGTCAATTTACGTTATGAATTTGGAATAAAATATGAATTCTGAATTGATTATTGCTATGTTTATGTTGTTAATCTATCAATTTCTAACGTTAATTCAGGGATTGCTTTGGACCTTGAACTTGGGGTTGGCGTAGCCATTTGTTTTTCAAGGACTAGACATTAGTGATATTTATTGTGTCCTCTTTAAAACTGTTGATAATAAAGAGGCTGGCCCATCTTA
>XM_036960941.1
tctgtctctctgtttggtaACTTTGTATCCACTGCATCGCCCCTTCCGTCAATAGAAGCACATGGTCCGTGTTTGTTGCAGGAAGTGAAGATGGCGGACCAGTCGTTGCTATCTGAGTCTGCTCTCGGGTGGTCTATATTCGCCCTTGTATTTTTGGTGATCCTGTCCTTCTGTTGGGTCTACATCAGGAAGTACCAGAGCCGCCAAGAGAGTGAGGTCATCTCAACCATCACTGCAATATGCGCATTGGCCATTGCACTGATAACCTCTGCACTTCTTCCAGTGGATATATTCCTAGTGTCTTACATGAAGCACCCCAACGGTACTTACAAGGAGTGGGCAGAAAACAATGAGACACGAGGCCAAATCGAAGACACTGTGCTGTATGCTTATTACTcactgtactctctcctcctgttctgTGTCTTCCTGTGGATCCCCTTTGTCTACTTCTATTATGAGGAGAAGGATGATGACAACATCAACAAGTGTTCACAAGTGAAAAATGCTCTGAAATACACAATTGGATTCATCATCGTCTGTGCAGCACTGCTATTAATTGGGGCCTTCGTTCCTCTTGAAGCCCCACCTAATCAGAATGGTACCCAGTGGGAAAAGATGCAGTATCTGTTTGAGGAGCTGGGGAACAACCaTGGTGTACCAGCCCTGTCTTTCTCCATCAGCTCCTTGACCTTGATTGGCATGTTGGCAGTGATCACttacacgGCGTATGGTATGTCAGTGCTGCCGTTGAACCTGATTAAAGGGACACGCAGTGTGGTGTACGAGCGTCTGGAGAACACTGAAGATATTGAAGAGGTTGAACACCAGATGGAAAATATCAAAGCCAAGattcTGCTGGGAATTTTCTTCATCCTGTTCGCTCTGCTGTTTGTTGTTGCTCTGTTCATTTCAAAtTTGGACAAAGCTCTTCACTCTGCTGGCATCAGTTCTGGCTTCATGGTGTTTGGCACCAACCTGACCAACCCTCTGAATGAACTCCTGCTGACTCTACAGCCTGTGTTCCCGTTGGATTATGTCCTGATCACTGTCATCACCATGTACTTTGTGTTCACCTCCATGGCCGGCATCAGGAACTTGGGCATCTGGTTCTTCTGGATACGGCTGTACAAGATCAGACCCAAGAGAACCCGTCCCCaggccctcctcttcctctgcatgATTCTACTGCTGATTGTCCTTCACACCAGCTTCATGATCTACAGCCTGGCCCCGCAGTACGTCATGTACGGGAGCCAGAACTACCTGCTGCAGGTGACCCCAGGCTGGAGCCCGATGCCACCAGAGAATAATACCACTTGGACTACCAAGACCTGTGATGCCGACGCACCTCAAGACGAATGCACAGTGACGAGGTCGTACCTATTCCTCCACAAGTTCTGGTTCTTCAGTACCATCTACTACTTTGGTAACTGGGTGTTTATCGGGGTTTTCCTCATCGGCCTGGTGGTGTCATGTTGTAAGGGGAAGAAATCAGTGATCGAAGGCGAGGTGGAGGCAGATGACTCTGACATGAGTGAAGACGAATATGTCCACTGACAAGACCACAGCctgccagacctgggttcaaatactatttgaaatgttttaaatacttttgagcatttgctttagcctgcctgggaGTGCCGGGTGGGCGGGGTTTGCATGTTCTGGACTTTTCTATTGGTTCACCTGCAAAAGGCAAGCTTAATCAAATACAATTGAAGtattttaaatcattttaaacagtgtgccctaatgaatatggCCCAGGTCTGCTACCTGCATGGACcaggagacatttaaacaggATTGGTTTCTGTTTCAGCTGGTTTGCAATAACGTAAGAATTGAACATTTGGATTGTTCATACAAGGCAGTAAAACTTTAATTTGAACTGTTGTTTTCTGGTTTCTGCCTGAGATTGGTTAATATTCCACAGCGTTGTGTTGATActgatgtattattattattagaacaGGAGAGGGTGATTGTGAGGTTGCTTTTTTCTATTAGGGCaactttttgtttttttgttcagtCAAGTGTCTTTGTTCAAAGCAGTATGTAAAACCctgattgcatcccaaatggcaccctatttcaaatatagtgcacttcttttgaccaaagccctattggaccctggtcaaaagtagtgcactatatagggaatagtgttccatttgagATGCAGCCCCTCTTTGTATTACTATGGGTATGTGCCTGTTGTTTCAAATGTCATCTCCACCAATTCCATGTTTTTATGTTTCCAAAAAGAAAGATTTAgtgttgcaaaattctggtataTTTTCCAAAATGAGAGGATTCTGAATTTCCTGCTTATTTCCTTCACTATTCTGGGAATCTTCAAATGGGTAATAAAAAGACAGAAAAACCAGGTGATTTGTGGAAAGTTCCCAACATTTTCTAACCCTAAGAAAGATCCCTGGTTGAGAACCAAACGGTGAGTTATTCAACAAGCCTGTGGTACTGGATGTTTTGGATCCTGAAAAGACAAGATGTTGTTGGGGAAACATAGTCCAGGATTACTTTTTTATTTGAACTCAGCACATTTTTGTTGACATGTACATTTCTGTAATATATGGCTGGATAAATGTTTATTTTAGCCTTTAACAGATGTATTATTTTTAAGATGACTAACTTAGCACATTCAGCATGTTAACTTACAGCAACAAATAGGGACTTGTATTTGATACCATATTGATAATGCACATTGCTGAGTTAAAATATATATTATCTTATCCCTGATTTTGGTCGTGTTTGGTTGGGCTTAGCTTGACTAACTGTTATTGCGTTGATGAATTGATTTGCTGTAAAGTTCTCTGAACATGAACTGAGCATAATATCACTGGACTACTGATCACAATGTCAATTTACGTTATGAATTTGGAATAAAATATGAATTCTGAATTGATTATTGCTATGTTTATGTTGTTAATCTATCAATTTCTAACGTTAATTCAGGGATTGCTTTGGACCTTGAACTTGGGGTTGGCGTAGCCATTTGTTTTTCAAGGACTAGACATTAGTGATATTTATTGTGTCCTCTTTAAAACTGTTGATAATAAAGAGGCTGGCCCATCTTA

Function

symbol description
lmbrd1 Predicted to enable cobalamin binding activity. Predicted to be involved in protein localization to lysosome. Predicted to act upstream of or within insulin receptor internalization. Predicted to be located in clathrin-coated endocytic vesicle; endoplasmic reticulum membrane; and plasma membrane. Predicted to be active in lysosomal membrane. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblF. Orthologous to human LMBRD1 (LMBR1 domain containing 1).

NR:

description
probable lysosomal cobalamin transporter isoform X1

GO: NA

KEGG:

id description
K14617 LMBRD1; LMBR1 domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960939.1 False 3266 mRNA 0.43 17 60646066 60907352
XM_036960940.1 False 3251 mRNA 0.43 17 60646066 60907352
XM_036960941.1 True 3113 mRNA 0.42 15 60646066 60907352

Neighbor

gene id symbol gene type direction distance location
col9a1b LOC106560234 coding upstream 275005 60325289 ~ 60371061 (+)
slc35f3b slc35f3 coding upstream 471937 60012705 ~ 60174129 (+)
LOC110503042 kcnk1 coding upstream 673532 59962215 ~ 59972534 (+)
LOC110503015 LOC106589751 coding upstream 779291 59847111 ~ 59866775 (+)
LOC110503016 LOC106611257 coding upstream 829645 59703394 ~ 59816421 (+)
LOC118943928 LOC106577473 coding downstream 586305 61493657 ~ 61522049 (+)
LOC118943929 LOC106577282 coding downstream 633800 61541152 ~ 61555170 (+)
LOC110532895 LOC106577282 coding downstream 650659 61558011 ~ 61575674 (+)
LOC110522442 LOC106577282 coding downstream 698672 61606024 ~ 61614271 (+)
LOC118943838 LOC106577289 coding downstream 708630 61615982 ~ 61620197 (+)
G1887295 NA non-coding upstream 13843 60631922 ~ 60632223 (+)
G1887291 NA non-coding upstream 16622 60629130 ~ 60629444 (+)
G1887289 NA non-coding upstream 17959 60627781 ~ 60628107 (+)
G1887108 NA non-coding upstream 99330 60546318 ~ 60546736 (+)
G1887073 NA non-coding upstream 177376 60467866 ~ 60468690 (+)
G1887507 NA non-coding downstream 1435 60908787 ~ 60909507 (+)
G1887508 NA non-coding downstream 2464 60909816 ~ 60910401 (+)
G1887511 NA non-coding downstream 5010 60912362 ~ 60912890 (+)
G1887516 NA non-coding downstream 9039 60916391 ~ 60916659 (+)
G1887525 NA non-coding downstream 23333 60930685 ~ 60930905 (+)
G1886561 NA other upstream 858077 59783986 ~ 59787989 (+)
G1886560 NA other upstream 859971 59749718 ~ 59786095 (+)
G1886557 NA other upstream 909405 59724264 ~ 59736661 (+)
G1887835 NA other downstream 369423 61276775 ~ 61277763 (+)
G1888298 NA other downstream 1019394 61926746 ~ 61927857 (+)
G1888544 NA other downstream 1657173 62564525 ~ 62565083 (+)

Expression

LOC110516668(lmbrd1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC110516668(lmbrd1) Expression in each Bioproject

Bar chart with 21 bars.
LOC110516668(lmbrd1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network