LOC118943838 (LOC106577289)


Basic Information

Item Value
gene id LOC118943838
gene name LOC106577289
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 61615982 ~ 61620197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959919.1
CCGATGACTGCTCTGCACCCGTGAACCAGTGTGTGTTGAATCCCTGTGACCCGGAGGGGACCCTGTTCTGTGAAGAGCTGCCGAACGGCTTCAGATGCGTCTGCCAACACGGGTACATGGGGCGGCTGTGCGAAATCCCCATAAGTCACTGCGTCGATGGGCTGTGTCATCGCGGATCAAAGTGTGTGGATCTACCGAGAGGATTCAAGTGCCATTGTTTACCCGGTTTAACGGGACAATTCTGCGACGTGAACATAGATGACTGTGAAGAGAAGCCGTGCGGTGTTCTGAGTATTTGCAAAGACACCGTCAACGGCTACAATTGTTTCTGTGCACCTGGATTCATTGGTAATAACTGTGAAGTGGAGGTAAACGAGTGTCTGAGCCAGCCCTGCCACAACGGAGCTTCCTGCTCTGATGAGCTCAACGCATTCAGCTGCTTATGCCCAATCGGagtcacagGACGTTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959919.1 True 470 mRNA 0.53 4 61615982 61620197

Neighbor

gene id symbol gene type direction distance location
LOC110522442 LOC106577282 coding upstream 1711 61606024 ~ 61614271 (+)
LOC110532895 LOC106577282 coding upstream 40308 61558011 ~ 61575674 (+)
LOC118943929 LOC106577282 coding upstream 60812 61541152 ~ 61555170 (+)
LOC118943928 LOC106577473 coding upstream 93933 61493657 ~ 61522049 (+)
LOC110516668 lmbrd1 coding upstream 708630 60646066 ~ 60907352 (+)
LOC118943839 LOC106577359 coding downstream 123552 61743749 ~ 61815674 (+)
LOC110516873 LOC105008825 coding downstream 203268 61823465 ~ 61990656 (+)
LOC118943931 NA coding downstream 417458 62036002 ~ 62038690 (+)
LOC110531647 LOC106592896 coding downstream 457816 62078013 ~ 62114232 (+)
LOC110516194 LOC106562987 coding downstream 671542 62291739 ~ 62339471 (+)
G1888129 NA non-coding upstream 24992 61589736 ~ 61590990 (+)
G1888128 NA non-coding upstream 27618 61587587 ~ 61588364 (+)
G1888096 NA non-coding upstream 54818 61559527 ~ 61561164 (+)
G1888083 NA non-coding upstream 70348 61544531 ~ 61545634 (+)
G1888161 NA non-coding downstream 28857 61649054 ~ 61649486 (+)
G1888170 NA non-coding downstream 52779 61672976 ~ 61673579 (+)
G1888238 NA non-coding downstream 181805 61802002 ~ 61802900 (+)
G1888251 NA non-coding downstream 214413 61834610 ~ 61835067 (+)
G1888257 NA non-coding downstream 231182 61851379 ~ 61852170 (+)
G1887835 NA other upstream 338219 61276775 ~ 61277763 (+)
slc35f3b slc35f3 other upstream 1445202 60012705 ~ 60174129 (+)
G1886561 NA other upstream 1827993 59783986 ~ 59787989 (+)
G1886560 NA other upstream 1829887 59749718 ~ 59786095 (+)
G1886558 NA other upstream 1879511 59727746 ~ 59736471 (+)
G1888298 NA other downstream 306549 61926746 ~ 61927857 (+)
G1888544 NA other downstream 944328 62564525 ~ 62565083 (+)

Expression


Co-expression Network