LOC118943932


Basic Information

Item Value
gene id LOC118943932
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62034977 ~ 62038662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039284.1
GTAAAAtaagagacaaagcaagaagatcattctatgccattaaaataAACATTAATATTCACCAGTTTGGGCTGGCTAGTGGCATCAgtgctatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttggcgaATGGTAGGGGGCCAGCTGAACAGCAGTGGGGGTCCAGATCTTTCAGAGCGCAGGGCCTCAATGGACAGAGAGGAaaaaggagtgtgtgtgagaacaggGAGAGGGGTCTCTGCCATTGTCTGCTGGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTCCACCACAGCTCTGAAGCTGCTTTGTGTCTCTGCTGGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTCCACCACAGCTCTGAAGCTGCTTTGTGTCTCTGCTGGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTTCACCACAGCTCTAAAGCTGCTTTGTGTCTCTGCTGGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTCCACCACAGCTCTGAAGTTGCTTTGTGTCTCTGCTGGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTCCACCACAGCTCTGAAgctgctgtgtgtctctgctgGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTTCACCACAGCTCTGAAgctgctgtgtgtctctgctgGTCTCTGGTTGCCAGGTCCTGCCAGATCCTCTCCACCACAGCTCTGAAGCTGCTTTGTGTCTCTGCTGGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTCCACCACAGCTCTGAAgctgctgtgtgtctctgctgGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTCCACCACAGCTCTGAAgctgctgtgtgtctctgctgGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTCCACCACAGCTCTGAAGCTGCTTTGTGTCTCTGCTGGTCTCTGGTCCCATAAAAAAACAGTCAGTTCTTACTAAAATCTtcattttaaaactttttttttttttatcagaaacTAAATATTAATCTGAAAAGGGCATTCATCAGCACAGGAACTAAATACATCTCTGAAACAGGCATTCATCAGCACAGGAACTAAAGACACATTTCTGAAACAGGCATTCATCAGCACAGGAACTAAATACACATATCTGAAACAGGCATTCATCAGCACAGGAACTAAAGACACATCTCTGAAACAGACATTGATCAGCACAGGAACTAAAGACACATATCTGAAACAGGCATTCATCAGCACAGGAACTAAATACATTTCTGAAACAGGCATTCATCAGCACAGGAACTAAAGACACATCTCTGAAACAGGCATTCATCAGCACAGGAACTAAAGACACATTTCTGAAACAGACATTGATCAGCACAGGAACTAAAGACACATCTCTGAAACAGGCATTCATCAGCACAGGAA
>TU2160825
GTATTACATCATGGTTAAACCTgttgtcatctactgtagtattacatcatggttaaacctgttgtcatctactgtagtattacatcatggttaaacctgttgtcatctactgtagtattacatcatggttaaacctgttgtcatctactgtagtattaCATCATGGTTAAACCTGTTGTCACCTACTGTAGTATTACATCATGGTTAAACCTGTTGTCACCATCTACTGTAGTATTACATCATGGTTAAACCTGTTGTCATCATCTACTGTAGTACTACATCATGGTTAAACCTgttgtcatctactgtagtattacatcatggttaaacatgttgtcatctactgtagtattacatcatggttaaacctgttgtcatctactgtagtattacatcatggttaaacctgttgtcatctactgtagtattacatcatggttaaacctgttgtcatctactgtagtattaCATCATGGTAAAA
>TU2160826
GTATTACATCATGGTTAAACCTgttgtcatctactgtagtattacatcatggttaaacctgttgtcatctactgtagtattacatcatggttaaacctgttgtcatctactgtagtattacatcatggttaaacctgttgtcatctactgtagtattaCATCATGGTTAAACCTGTTGTCACCTACTGTAGTATTACATCATGGTTAAACCTgttgtcatctactgtagtattacatcatggttaaacctgttgtcatctactgtagtattacatcatggttaaacctgttgtcatctactgtagtattacatcatggttaaacctgttgtcatctactgtagtactacatcatggttaaacctgttgtcatctactgtagtattacatcatggttaaacctgttgtcatctactgtagtattacatcatggttaaacctgttgtcatctactgtagtactacatcatggttaaacctgttgtcatctactgtagtattaCATCATGGTTAAACCTGTTGTCACCACCTACTTTAGTATTACATCATGGTTAAACCTgttgtcatctactgtagtattacatcatggttaaacctgttgtcatctattgtagtattacatcatggttaaacctgttgtcatctactgtagtattaCAGCATGGTTAAACCTGTTGTCACCACCTACTTTAGTATTACATCATGGTAAAACCTgttgtcatctactgtagtattaCATCATGGTTAAACCTGTTGTCATCTATTGTAGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039284.1 False 1433 mRNA 0.49 2 62034977 62036477
TU2160825 False 481 lncRNA 0.34 3 62036472 62038662
TU2160826 True 769 lncRNA 0.35 2 62037212 62038662

Neighbor

gene id symbol gene type direction distance location
LOC118943930 LOC106577366 coding downstream 24325 61991088 ~ 62010652 (-)
LOC110512348 LOC100135993 coding downstream 635688 61395693 ~ 61399289 (-)
adgrb3 adgrb3 coding downstream 760360 60939373 ~ 61274617 (-)
LOC110515674 col19a1 coding downstream 1401683 60371446 ~ 60633294 (-)
LOC110514479 LOC106594326 coding downstream 1714135 60266566 ~ 60320842 (-)
LOC118943934 LOC106592896 coding upstream 83453 62119930 ~ 62147728 (-)
LOC118943840 NA coding upstream 117428 62152136 ~ 62164324 (-)
LOC118943935 LOC106592896 coding upstream 131100 62167577 ~ 62202628 (-)
LOC118943936 LOC106562881 coding upstream 170784 62207261 ~ 62209682 (-)
LOC118943933 LOC106592896 coding upstream 184424 62220901 ~ 62242704 (-)
G1888801 NA non-coding downstream 6743 62027820 ~ 62028234 (-)
G1888799 NA non-coding downstream 18538 62016231 ~ 62016439 (-)
G1888793 NA non-coding downstream 46130 61988301 ~ 61988847 (-)
G1888790 NA non-coding downstream 55690 61979011 ~ 61979287 (-)
G1888788 NA non-coding downstream 56958 61977785 ~ 61978019 (-)
G1888804 NA non-coding upstream 13185 62049662 ~ 62049989 (-)
G1888807 NA non-coding upstream 18170 62054647 ~ 62054943 (-)
G1888765 NA non-coding upstream 19857 62056334 ~ 62056729 (-)
G1888763 NA non-coding upstream 20919 62057396 ~ 62059150 (-)
G1888766 NA non-coding upstream 23810 62060287 ~ 62069511 (-)
G1887761 NA other downstream 883807 61150056 ~ 61151170 (-)
G1887449 NA other downstream 1209187 60774110 ~ 60825790 (-)
G1886838 NA other downstream 2037914 59995384 ~ 59997063 (-)
G1886825 NA other downstream 2068311 59966362 ~ 59966666 (-)
gpr75 gpr75 other downstream 2683107 59346393 ~ 59351909 (-)
G1888836 LOC106562881 other upstream 224360 62260837 ~ 62267505 (-)
LOC110532867 LOC106562881 other upstream 233145 62258118 ~ 62273944 (-)

Expression


Co-expression Network