LOC118943840


Basic Information

Item Value
gene id LOC118943840
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62152136 ~ 62164324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118943840
ATGAAGGCCTTCAAGACcctcgaagtgaactggggacctcgatcagacaATATATCCTCAGataTATGTTTGGTAAAAGGGGCAAAGCGGAAACTGGACGAGGATGAAGATGTGTTGGATGACAAAGCGATGGCGCCACAGAGGCCCATGACCACTACAACGACTCCCAACCCCAACGGCCTCAGCCTAGGTTTCTCCAAGATGGCCTACAATATTGTGTCGTACAACCTCCAGAGACAGAGCATCTTCAACATCTCTCTAATGAAGCTTTATAACCACTGGCTTCTGAGCCTGGAGAGACGTGTTCTCATCAACAACATGCTGTCCTGCATCTAGGAAGAGCTAAAACAGGAAGGCTCGCTGCGCCTGGTGGCTACCGCCACCCCGTCCCTTTCCCAGCAGCCTTCAGGGTGGCTCTTGGAGTCAGCCCCTCTGCCCTCGCTACTCCCCCCCTTCGCAACCACGCCCACCTGGTGGCCTGTCTCTCTGGAGGTCTGCATCACGCCCACCTTGCTATTGGAGGAAGACGGAGACGACGCCTCCTTTTGCACTTTGCCCCCGCCTaagtctcttcctcctcttcgtcctccCCCCTATGCCCCTCGCCCACCCCAGAAAACCTCTACCCTCTCCAAGGTACCTGTGCCTGCCTGCTGCAGAGACACTTTGTGCCCTACCCTGGGTGACATAGAGCAGCACTGTCCTCTCTCAGCCACACCACAGACAATAATAACCAGAACAACAACAGCAGCTAATACTATTAAGACTACTACCTTCCCCACAGCCTCAGCAGAGCCCCTTCAGACCCCATGCCAACTGCCCCCCgtgcccccctcctctccacaacAGTAACAACCACAGCCACAGTAACAGCCACAATAACAACCACAGCCAAAGGCCAATTCAAAGACTGCATCAGGACAGGCAGCCCCACACTAGACGGGCCGGTGTCCTTACTTGACAGCAGGAGTATAGAGTCCAGACTGATGGacactcttcctcctccccttcctctttctcctcctagtGGCTTGGATTTAAactcctccccttccttctcctcctcttcctcctcaggttTCTTCACTGACCTGGCAATGGATGAGATCCTGTTTGCAGACATCGACACCTCCATGTATGACTTTGACACATGCACGACCCCTGCCGCCCCCTCAGTCATGCCCAGCCAACCTTTCAACATGGACCTGACGGAACTGGACCACATTATGGAGGTCCTGGTCGGGTCGTGACTCTGGACTACATTATGGAGGTCCTGGTTGGGTCGTGACTCTGGACCACATTATGGAGGTCCTGGTCGGGTCGTGACTCTGGACTACATTATGGAGGTCCTGGTCGGGTCGTGACTCTGGACTACAACTGGACTACATTATGGAGGTCCTGGTCGGGTCGTGACTCTGGACTACATTATGGAGGTCCTGGTCGGGTCGTGACTCTGGACTACAACTGGACTACATTATTGAGGTCCTGGTTGGGTCGTGACTCTGGACTACATTATGTAGGTCCTGGTCGGGTCGTGACTCTGGACTACATTATCGAGGTCCTGGTCGAGTCGTGACTCTGGACTACATTATGGAGGTCCTGGTCGGGTCGTGACTCTGGACTACATTATGGAGGTCCTGGTCGGGTCGTGACTCTGGACTACAACTGGACTACATTATGGAGGTCCTGGTCGGGTCGTGACTCTGGACTACATTATGGAGGTCCTGGTCGGGTCGTGACTCTGGACTACAACTGGACTACATTATTGAGGTCCTGGTTGGGTCGTGACTCTGGACTACATTATGTAGGTCCTGGTCGGGTCGTGACTCTGGACTACATTATCGAGGTCCTGGTCGAGTCGTGACTCTGGACTACATTATGGAGGTCCTGGTCGGGTCGTGACTCTGGACTACA
>TU2160860
TATGGAGGTCCTGGTTGGGTCGTGACTCTGGACCACATTATGGAGGTCCTGGTCGGGTCGTGACTCTGGACTACATTATGGAGGTCCTGGTCGGGTCGTGACTCTGGACTACAACTGGACTACATTATGGAGGTCCTGGTCGGGTCGTGACTCTGGACTACATTATGGAGGTCCTGGTCGGGTCGTGACTCTGGACTACAACTGGACTACATTATTGAGGTCCTGGTTGGGTCGTGACTCTGGACTACATTATGTAGGTCCTGGTCGGGTCGTGACTCTGGACTACATTATCGAGGTCCTGGTTGGGTCGTGACTCTGGACTACATTATGTAGGTCCTGGTCGAGTCGTGACTCTGGACTACATTATGGAGGTCCTGGTCGGGTCTTGTTCTTCTCCTTGGTCCTCCAGAGACTGTAAACTCTGTTGATGCTCCTTCTTCTCCTTGGTCCTCCAGAGACTGTAAACTCTGTTGATGCTCCTTCTTCTCCTTGGTACTCCAGAGACTGTAAACTCTGTTGATGCTCCTTCTTCTCCTTGGTTCCCCAGAGACTGTAAACTCTGTTGATGCTCCTTCTTCTACTTTTTTCCCCAGAGACTGTAAACTCTATTGATGCCTCTTCTTCTCC
>TU2160862
GAAGAGGACGAGGAGCGGATCCGGTGCAGAGAAACAAAAGataTATGTTTGGTAAAAGGGGCAAAGCGGAAACTGGACGAGGATGAAGATGTGTTGGATGACAAAGCGATGGCGCCACAGAGGCCCATGACCACTACAACGACTCCCAACCCCAACGGCCTCAGCCTAGGTTTCTCCAAGATGGCCTACAATATTTAAAGATCTTGTTCATTTCTTTTCTTGAACCATTTATACAGTATGCCTTTATCCGAATTGTCGTGTCGTACAACCTCCAGAGACAGAGCATCTTCAACATCTCTCTAATGAAGCTTTATAACCACTGGCTTCTGAGCCTGGAGAGACGTGTTCTCATCAACAACATGCTGTCCTGCATCTAGGAAGAGCTAAAACAGGAAGGCTCGCTGCGCCGTCCAGCTCTCCTCCTGCCCCCCTCGCAGATGATCCCATGGACGAGGACTTCTGTGATGCCCCCCCGCCCACATTCGGCGGTGTGCTGTTAGTGGTGGCTACCGCCACCCCGTCCCTTTCCCAGCAGCCTTCAGGGTGGCTCTTGGAGTCAGCCCCTCTGCCCTCGCTACTCCCCCCCTTCGCAACCACGCCCACCTGGTGGCCTGTCTCTCTGGAGGTCTGCATCACGCCCACCTTGCTATTGGAGGAAGACGGAGACGACGCCTCCTTTTGCACTTTGCCCCCGCCTaagtctcttcctcctcttcgtcctccC
>TU2160863
GAAGAGGACGAGGAGCGGATCCGGTGCAGAGAAACAAAAGGTATATAAAGAGAAATTGCCATTTAATTGGCGCTGACTTCTTGAATTCTGAATTCATTTAGACAACCATTTGACTTCGGGTAATTGCCACCTGACTCAAATTACTTAAAGATTCTAACTTGCTGGAACTTGGGCTCTTGCCGTTTAGCTATTTAGCTATTTATGCCGTTTAGCTATTGAACAGTTGTTCTAGTCTCCATCTGACCCGTTGCTTGGTTTATCTTGATGCAATAATATCTTAACCGATTGAACTCAACATTCCGGCCGGGACTTATCGCCACTGACACTGCGGTAGCTCAGCGGAGAATCTCTCGTCCCTCCAGACTAACTTGAATCTCGAAATTTAGTTGAACCACTCAAATTATCTATAGATTCTAACTTGCTGGAACTCAGGTTCGTGCCGCTTACCTATCGGACAGTTGTACTTGTCGCCATTTGCCCTGTGCTCGGTTTATCTTGATGCAATAATATCTTAACTGATTGAGCTCAACATTCCGGCTGGGTATTTTCGCCACAGACACTGTGGTAGATCAACGGTGAACCTCTGATCTCTCCAGACTAACTTGAATCTCTAAATTTAAGTAAACCACCGATCTCTCATAGGAGGAATCGATACCGAAACTAAATTCTCAGAACTCTGACCGATTGAAACTCTGCTCCTGATCTCGTGGGTCTCCCCGTCATCTCTCGAAGataTATGTTTGGTAAAAGGGGCAAAGCGGAAACTGGACGAGGATGAAGATGTGTTGGATGACAAAGCGATGGCGCCACAGAGGCCCATGACCACTACAACGACTCCCAACCCCAACGGCCTCAGCCTAGGTTTCTCCAAGATGGCCTACAATATTTAAAGATCTTGTTCATTTCTTTTCTTGAACCATTTATACAGTATGCCTTTATCCGAATTGTCGTGTCGTACAACCTCCAGAGACAGAGCATCTTCAACATCTCTCTAATGAAGCTTTATAACCACTGGCTTCTGAGCCTGGAGAGACGTGTTCTCATCAACAACATGCTGTCCTGCATCTAGGAAGAGCTAAAACAGGAAGGCTCGCTGCGCCGTCCAGCTCTCCTCCTGCCCCCCTCGCAGATGATCCCATGGACGAGGACTTCTGTGATGCCCCCCCGCCCACATTCGGCGGTGTGCTGTTAGTGGTGGCTACCGCCACCCCGTCCCTTTCCCAGCAGCCTTCAGGGTGGCTCTTGGAGTCAGCCCCTCTGCCCTCGCTACTCCCCCCCTTCGCAACCACGCCCACCTGGTGGCCTGTCTCTCTGGAGGTCTGCATCACGCCCACCTTGCTATTGGAGGAAGACGGAGACGACGCCTCCTTTTGCACTTTGCCCCCGCCTaagtctcttcctcctcttcgtcctccC

Function

NR:

description
PREDICTED: SERTA domain-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118943840 False 1914 mRNA 0.49 4 62153905 62164324
TU2160860 False 627 lncRNA 0.50 4 62152136 62154555
TU2160862 False 724 TUCP 0.54 3 62155228 62162389
TU2160863 True 1416 TUCP 0.49 3 62155228 62162389
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118943934 LOC106592896 coding downstream 6177 62119930 ~ 62147728 (-)
slc1a4 slc1a4 coding downstream 91622 62019428 ~ 62062283 (-)
LOC118943932 NA coding downstream 117428 62034977 ~ 62038662 (-)
LOC118943930 LOC106577366 coding downstream 143253 61991088 ~ 62010652 (-)
LOC110512348 LOC100135993 coding downstream 754616 61395693 ~ 61399289 (-)
LOC118943935 LOC106592896 coding upstream 3253 62167577 ~ 62202628 (-)
LOC118943936 LOC106562881 coding upstream 42937 62207261 ~ 62209682 (-)
LOC118943933 LOC106592896 coding upstream 56577 62220901 ~ 62242704 (-)
LOC110532867 LOC106562881 coding upstream 93794 62258118 ~ 62273944 (-)
LOC118943937 NA coding upstream 95163 62259487 ~ 62262338 (-)
G1888806 NA non-coding downstream 39684 62110846 ~ 62114221 (-)
G1888812 NA non-coding downstream 70525 62080685 ~ 62083380 (-)
G1888766 NA non-coding downstream 84394 62060287 ~ 62069511 (-)
G1888763 NA non-coding downstream 94755 62057396 ~ 62059150 (-)
G1888765 NA non-coding downstream 97176 62056334 ~ 62056729 (-)
G1888831 NA non-coding upstream 1068 62165392 ~ 62166459 (-)
G1888832 NA non-coding upstream 4447 62168771 ~ 62222170 (-)
G1888761 LOC106592896 non-coding upstream 35266 62199590 ~ 62241532 (-)
LOC118943938 LOC106577312 non-coding upstream 112115 62276439 ~ 62310445 (-)
G1887761 NA other downstream 1002735 61150056 ~ 61151170 (-)
G1887449 NA other downstream 1328115 60774110 ~ 60825790 (-)
G1886838 NA other downstream 2156842 59995384 ~ 59997063 (-)
G1886825 NA other downstream 2187239 59966362 ~ 59966666 (-)
gpr75 gpr75 other downstream 2802035 59346393 ~ 59351909 (-)
G1888836 LOC106562881 other upstream 96513 62260837 ~ 62267505 (-)
LOC118943840 NA other upstream 673 62152136 ~ 62164324 (-)

Expression

LOC118943840 Expression in all Baseline Samples

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LOC118943840 Expression in each Bioproject

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LOC118943840 Expression in each Sample
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Co-expression Network