LOC118943935 (LOC106592896)


Basic Information

Item Value
gene id LOC118943935
gene name LOC106592896
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62167577 ~ 62202628 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960990.1
GTTTGATCACAGAACACTAGTACATTTATCAGACTGCAGTGCCTCAATAGGACTGATTCAACCAGTCTTTCTCTTCATGATGAATATAATTGTCTTCAGGAATGAAGGTGACTCAACTAGACTGTCTGTGTCTGATTCTTCTACATCTCCTACACACATCAGGCtctgAGAGGTTTGAGGTTCTTGGTCCAACTGATTCCATTGTTGCTGTAGCTGGTGATGACATCATTCTGCCCTGTTACCTCAaacccaacatcagtgctgaGGACATGACAGTGGACTGGCTGAACCTGGACTTCTTAGACGAACGTGTCTTTCGTTACCAAAACCACAGAATCATACGAGATGATCAGATTCCCTACTATAGAGGAAGAACTTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTAATTCAGTCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGCTGTAGGATCCAAGCCAGTGGTGTCCATtgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGACCCTGAGCTGGTGTGGCTGGACAGTAAAGGAGTCCATCTCTCTGCTCGAACTcttgagacacacagagacttcaAGGGATTCTACAGAGTCAAACAACATGTCATTGTCCAGGAGACTGACACAAACCACTTTACCTGCAGAGTCCAACAGAAACGGATCAATgagaagatggagacagagattcACCTCCCTAGTGAGTTATTTGATCCAACCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCATTGGGATTGGGTTATCTCTGGCTATCTACTGCATATGTTATAAGAAAGATGACCTCACTGAGCAGCGAGATGACCTCAAGAAGGATAATAATGACATCACTAGGAAGCTAGATGACCACAATGGGAAGCTAGAAATCCTGACTTCTCAGCTGGATTTTGTGAACACAAACTGGAGTCCAGATTTTGAAACCATCAGAACACATGCAGTGGATGTGACTCTAGACCCTGATACTGCACATCGTAACCTCATCCTGTCTGATGACGGGAAACAAGTGAGACATGGAGAACTAAATCAGGTTCTCTCTGACAACAGGAAGAGGTATAAAAATTGGTCCGGTGTCCTCGGAAATGTGGGCTTCTCAAGGAAGTTCTACTATGAGGTGAAGGTGGAGGGGAAGACTGAGTGGACTTTGGGAGTGGTCAGAAGGTCCATCAATAGGAATGAGAGGTCTAGACCGATCCCTTATAAAGGATACTGGActgtggagctgaaggatggaaaGTACACAGCTCACGCTGATTCCCCTCTCACCCTCTTACTGAGAGAGAAGCCCCTGAAAGTGGGTGTGTTTGTGGATTATGAGAAGGGACAGGTATCCTTCTacaatgtggaggccaggtctcaTATCTACTCTTTCACACGCTCCAAATTTTCTAAGAAACTCTATCCATTCTTCAACCCTGGTGGTTCAGATAGTATTTCACTGGTCGTCTGTCCTGTGGatgccactgactgactgttttaAAACAAACAAGGCAGATACAGTATAAACAGCAGTAACTCCTATTGAGAGACTTAATGTACATGAGATCTTAGTTATAGATTTCCTGTCAATCTTTGTTGTTGTGGTAGAGTGGACCAGTTGATTGTTTATTGGATAAGACAGAGAGGTAAAGGTAGGAATGTTGAAAGAGCAATGGGTTGGATCTGAACCCATTCTGGTACTGGACCATCCCAGACCACTGATTTCTTGTTAATGTTTGACTAATCTTTGACGTTTCTTTCACCAATCCCTTGGACTGTTCTGTCTTCATGAGAGTGTGTTATATGTagactgtagctaagaaagtaatactaagtgtatgttgtgtagtaagctgttagtagtccATGTGCCTCACACTAATACTTTGGTCCCTTTTCCCTTTTTTGtatatttcaaaagtgctgaacaagtaGTTATATTGACAACGTCTGTCCTCGCTCGCTCATTTATGGCttcatcgaaattacggattgcctcttatacgctcctcgttcccttatgccatagtttgtacatctcaattgtcagtagaaaccacatttgtttaaacaag
>XM_036960989.1
TGTGCAGCGATGCAGTTGAACAGGTTATTGTTCCAAGGAATAGAAAGAAGAAGGAGGTAGTTTGATCACATCACAATAGTTTGATCACAGAACACTAGTACATTTATCAGACTGCAGTGCCTCAATAGGACTGATTCAACCAGGAATGAAGGTGACTCAACTAGACTGTCTGTGTCTGATTCTTCTACATCTCCTACACACATCAGGCtctgAGAGGTTTGAGGTTCTTGGTCCAACTGATTCCATTGTTGCTGTAGCTGGTGATGACATCATTCTGCCCTGTTACCTCAaacccaacatcagtgctgaGGACATGACAGTGGACTGGCTGAACCTGGACTTCTTAGACGAACGTGTCTTTCGTTACCAAAACCACAGAATCATACGAGATGATCAGATTCCCTACTATAGAGGAAGAACTTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTAATTCAGTCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGCTGTAGGATCCAAGCCAGTGGTGTCCATtgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGACCCTGAGCTGGTGTGGCTGGACAGTAAAGGAGTCCATCTCTCTGCTCGAACTcttgagacacacagagacttcaAGGGATTCTACAGAGTCAAACAACATGTCATTGTCCAGGAGACTGACACAAACCACTTTACCTGCAGAGTCCAACAGAAACGGATCAATgagaagatggagacagagattcACCTCCCTAGTGAGTTATTTGATCCAACCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCATTGGGATTGGGTTATCTCTGGCTATCTACTGCATATGTTATAAGAAAGATGACCTCACTGAGCAGCGAGATGACCTCAAGAAGGATAATAATGACATCACTAGGAAGCTAGATGACCACAATGGGAAGCTAGAAATCCTGACTTCTCAGCTGGATTTTGTGAACACAAACTGGAGTCCAGATTTTGAAACCATCAGAACACATGCAGTGGATGTGACTCTAGACCCTGATACTGCACATCGTAACCTCATCCTGTCTGATGACGGGAAACAAGTGAGACATGGAGAACTAAATCAGGTTCTCTCTGACAACAGGAAGAGGTATAAAAATTGGTCCGGTGTCCTCGGAAATGTGGGCTTCTCAAGGAAGTTCTACTATGAGGTGAAGGTGGAGGGGAAGACTGAGTGGACTTTGGGAGTGGTCAGAAGGTCCATCAATAGGAATGAGAGGTCTAGACCGATCCCTTATAAAGGATACTGGActgtggagctgaaggatggaaaGTACACAGCTCACGCTGATTCCCCTCTCACCCTCTTACTGAGAGAGAAGCCCCTGAAAGTGGGTGTGTTTGTGGATTATGAGAAGGGACAGGTATCCTTCTacaatgtggaggccaggtctcaTATCTACTCTTTCACACGCTCCAAATTTTCTAAGAAACTCTATCCATTCTTCAACCCTGGTGGTTCAGATAGTATTTCACTGGTCGTCTGTCCTGTGGatgccactgactgactgttttaAAACAAACAAGGCAGATACAGTATAAACAGCAGTAACTCCTATTGAGAGACTTAATGTACATGAGATCTTAGTTATAGATTTCCTGTCAATCTTTGTTGTTGTGGTAGAGTGGACCAGTTGATTGTTTATTGGATAAGACAGAGAGGTAAAGGTAGGAATGTTGAAAGAGCAATGGGTTGGATCTGAACCCATTCTGGTACTGGACCATCCCAGACCACTGATTTCTTGTTAATGTTTGACTAATCTTTGACGTTTCTTTCACCAATCCCTTGGACTGTTCTGTCTTCATGAGAGTGTGTTATATGTagactgtagctaagaaagtaatactaagtgtatgttgtgtagtaagctgttagtagtccATGTGCCTCACACTAATACTTTGGTCCCTTTTCCCTTTTTTGtatatttcaaaagtgctgaacaagtaGTTATATTGACAACGTCTGTCCTCGCTCGCTCATTTATGGCttcatcgaaattacggattgcctcttatacgctcctcgttcccttatgccatagtttgtacatctcaattgtcagtagaaaccacatttgtttaaacaag

Function

NR:

description
PREDICTED: butyrophilin subfamily 1 member A1-like isoform X1

GO: NA

KEGG:

id description
K06712 BTN, CD277; butyrophilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960990.1 False 2187 mRNA 0.44 13 62167577 62202550
XM_036960989.1 True 2231 mRNA 0.44 13 62167577 62202628

Neighbor

gene id symbol gene type direction distance location
LOC118943840 NA coding downstream 3253 62152136 ~ 62164324 (-)
LOC118943934 LOC106592896 coding downstream 19849 62119930 ~ 62147728 (-)
slc1a4 slc1a4 coding downstream 105294 62019428 ~ 62062283 (-)
LOC118943932 NA coding downstream 131100 62034977 ~ 62038662 (-)
LOC118943930 LOC106577366 coding downstream 156925 61991088 ~ 62010652 (-)
LOC118943936 LOC106562881 coding upstream 4633 62207261 ~ 62209682 (-)
LOC118943933 LOC106592896 coding upstream 18273 62220901 ~ 62242704 (-)
LOC110532867 LOC106562881 coding upstream 55490 62258118 ~ 62273944 (-)
LOC118943937 NA coding upstream 56859 62259487 ~ 62262338 (-)
LOC118943938 LOC106577312 coding upstream 80709 62276439 ~ 62310445 (-)
G1888831 NA non-coding downstream 1118 62165392 ~ 62166459 (-)
G1888806 NA non-coding downstream 53356 62110846 ~ 62114221 (-)
G1888812 NA non-coding downstream 84197 62080685 ~ 62083380 (-)
G1888766 NA non-coding downstream 98066 62060287 ~ 62069511 (-)
G1888862 NA non-coding upstream 113978 62316606 ~ 62316954 (-)
G1888879 NA non-coding upstream 144619 62347247 ~ 62347941 (-)
G1888893 NA non-coding upstream 177059 62379687 ~ 62381107 (-)
G1887761 NA other downstream 1016407 61150056 ~ 61151170 (-)
G1887449 NA other downstream 1341787 60774110 ~ 60825790 (-)
G1886838 NA other downstream 2170514 59995384 ~ 59997063 (-)
G1886825 NA other downstream 2200911 59966362 ~ 59966666 (-)
G1888836 LOC106562881 other upstream 58209 62260837 ~ 62267505 (-)

Expression


Co-expression Network