LOC118943933 (LOC106592896)


Basic Information

Item Value
gene id LOC118943933
gene name LOC106592896
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62220901 ~ 62242704 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960977.1
TGTGCAGCGATGCAGTTGAACAGGTTCTTGTTCCaaggaagagaaagaagaaggaGGTAGTTTGATCACATCACAATAGTTTGATCACAGAACACTAGTACATTAATCAGACTGCAGTGCCTCAATAGGACCGATTCAACCAGGAATGAAGGTGACTCAACTAGACTGTCTGTGTCTGATTCTTCTACATCTCCTACACACATCAGGCtctgAGAAGTTTGAGGTTCTTGGTCCAACTGATTCCATTGTTGCTGTAGCTGGTGATGACATCGTTCTGCCCTGTTACCTCAAACCCAACATCAGCGTTGAGGACATGACAGTGGACTGGCTTAACCTGGACATCATAGACGGTCGTGTCTTTCGTTACCAAAACAGCGAAATCATACGAGATGATCAGATTCCCTCCTATAGAGGAAGAACTTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTAATTCAGTCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCAATTGtgggacacagagagggagggatgggtttgCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTCCTGAGATACATAGAAGTTTCAAGGGATTCTACAGAGTCAAACGACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGACAGATCAATgagaagatggagacagagattcACCTCCCTActGTAGGATCCAAGCCAGTGGTGTCCATtgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTcctgagacacacagagacttcaATGGATTCTACAGAGTCAAACAATATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCAGGATCAATGAGAAAATGGAGACAGAGATTCACCTCCCTAGTGAGTTATTTTATACAACCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCACTGTGATTGGGTTAGCTCTGGCTATCTACTGCATATGTTATAAGAAAGatgatctcaAGAAGGAAAGTGATGAACTCTGGGAGCAGAATCACAATAACAAGGAGAGGTTCTATGACCTCACTGTGGAGCTCGAAATACTGACTTCTCAGCTGGATTTTGTGAACACAAACTGGAGTCCAGATTTTGAAACCATCAGAAGACATGCAGTGGATGTGACTCTAGACCCTGATACTGCACATCGTAACCTCATCCTGTCTGATGACGGGAAACAAGTGAGACATGGAGAACTAAATCAGGTTCTCTCTGACAACAGGAAGAGGTATAAAAATTGGTCCGGTGTCCTCGGAAATGTGGGCTTCTCAAGGAAGTTCTACTATGAGGTGAAGGTGGAGGGGAAGACTGAGTGGACTTTGGGAGTGGTCAGAAGGTCCATCAATAGGAATGAGAGGTCTAGACCGATCCCTTATAAAGGATACTGGActgtggagctgaaggatggaaaGTACACAGCTCACGCTGATTCCCCTCTCACCCTCTTACTGAGAGAGAAGCCCCTGAAAGTGGGTGTGTTTGTGGATTATGAGAAGGGACAGGTATCCTTCTacaatgtggaggccaggtctcaTATCTACTCTTTCACACGCTCCAAATTTTCTAAGAAACTCTATCCATTCTTCAACCCTGGTGGTTCAGATAGTATTTCACTGGTCGTCTGTCCTGTGGatgccactgactgactgttttaacctttctgatctccc
>XM_036960978.1
TGTGCAGCGATGCAGTTGAACAGGTTCTTGTTCCaaggaagagaaagaagaaggaGGTAGTTTGATCACATCACAATAGTTTGATCACAGAACACTAGTACATTAATCAGACTGCAGTGCCTCAATAGGACCGATTCAACCAGGAATGAAGGTGACTCAACTAGACTGTCTGTGTCTGATTCTTCTACATCTCCTACACACATCAGGCtctgAGAAGTTTGAGGTTCTTGGTCCAACTGATTCCATTGTTGCTGTAGCTGGTGATGACATCGTTCTGCCCTGTTACCTCAAACCCAACATCAGCGTTGAGGACATGACAGTGGACTGGCTTAACCTGGACATCATAGACGGTCGTGTCTTTCGTTACCAAAACAGCGAAATCATACGAGATGATCAGATTCCCTCCTATAGAGGAAGAACTTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTAATTCAGTCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCAATTGtgggacacagagagggagggatgggtttgCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTCCTGAGATACATAGAAGTTTCAAGGGATTCTACAGAGTCAAACGACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGACAGATCAATgagaagatggagacagagattcACCTCCCTActGTAGGATCCAAGCCAGTGGTGTCCATtgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTcctgagacacacagagacttcaATGGATTCTACAGAGTCAAACAATATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCAGGATCAATGAGAAAATGGAGACAGAGATTCACCTCCCTAGTGAGTTATTTTATACAACCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCACTGTGATTGGGTTAGCTCTGGCTATCTACTGCATATGTTATAAGAAAGatgatctcaAGAAGGAAAGTGATGAACTCTGGGAGCAGAATCACAATAACAAGGAGAGGTTCTATGACCTCACTGTGGAGCTCGAAATACTGACTTCTCAGCTGGATTTTGAAACCATCAGAAGACATGCAGTGGATGTGACTCTAGACCCTGATACTGCACATCGTAACCTCATCCTGTCTGATGACGGGAAACAAGTGAGACATGGAGAACTAAATCAGGTTCTCTCTGACAACAGGAAGAGGTATAAAAATTGGTCCGGTGTCCTCGGAAATGTGGGCTTCTCAAGGAAGTTCTACTATGAGGTGAAGGTGGAGGGGAAGACTGAGTGGACTTTGGGAGTGGTCAGAAGGTCCATCAATAGGAATGAGAGGTCTAGACCGATCCCTTATAAAGGATACTGGActgtggagctgaaggatggaaaGTACACAGCTCACGCTGATTCCCCTCTCACCCTCTTACTGAGAGAGAAGCCCCTGAAAGTGGGTGTGTTTGTGGATTATGAGAAGGGACAGGTATCCTTCTacaatgtggaggccaggtctcaTATCTACTCTTTCACACGCTCCAAATTTTCTAAGAAACTCTATCCATTCTTCAACCCTGGTGGTTCAGATAGTATTTCACTGGTCGTCTGTCCTGTGGatgccactgactgactgttttaacctttctgatctccc

Function

NR:

description
butyrophilin subfamily 2 member A1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960977.1 False 1954 mRNA 0.47 14 62220901 62242704
XM_036960978.1 True 1927 mRNA 0.47 13 62220901 62242704

Neighbor

gene id symbol gene type direction distance location
LOC118943936 LOC106562881 coding downstream 11219 62207261 ~ 62209682 (-)
LOC118943935 LOC106592896 coding downstream 18273 62167577 ~ 62202628 (-)
LOC118943840 NA coding downstream 56577 62152136 ~ 62164324 (-)
LOC118943934 LOC106592896 coding downstream 73173 62119930 ~ 62147728 (-)
slc1a4 slc1a4 coding downstream 158618 62019428 ~ 62062283 (-)
LOC110532867 LOC106562881 coding upstream 15414 62258118 ~ 62273944 (-)
LOC118943937 NA coding upstream 16783 62259487 ~ 62262338 (-)
LOC118943938 LOC106577312 coding upstream 40633 62276439 ~ 62310445 (-)
LOC118943941 LOC105008298 coding upstream 249177 62491881 ~ 62560536 (-)
LOC118936590 LOC106577388 coding upstream 317974 62560678 ~ 62570675 (-)
G1888769 NA non-coding downstream 1351 62118484 ~ 62219550 (-)
G1888831 NA non-coding downstream 54442 62165392 ~ 62166459 (-)
G1888806 NA non-coding downstream 106680 62110846 ~ 62114221 (-)
G1888812 NA non-coding downstream 137521 62080685 ~ 62083380 (-)
G1888862 NA non-coding upstream 73902 62316606 ~ 62316954 (-)
G1888879 NA non-coding upstream 104543 62347247 ~ 62347941 (-)
G1888893 NA non-coding upstream 136983 62379687 ~ 62381107 (-)
G1887761 NA other downstream 1069731 61150056 ~ 61151170 (-)
G1887449 NA other downstream 1395111 60774110 ~ 60825790 (-)
G1886838 NA other downstream 2223838 59995384 ~ 59997063 (-)
G1886825 NA other downstream 2254235 59966362 ~ 59966666 (-)
G1888836 LOC106562881 other upstream 18133 62260837 ~ 62267505 (-)

Expression


Co-expression Network