G1822081


Basic Information

Item Value
gene id G1822081
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 1888208 ~ 1891148 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2085614
cacaaacactccctcagcctgttactgtctatcagaacacaacaatacaaacactccctcagcctgttactgtatcagaacacaaacactccctcagcctgttactgtgtcagaacacaaacactccctcagcctgttactgtatcagaacacaaacactccctcagcctgttactgtctatcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaaacactccctcagtatgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaaacactccctcagcatgttactgtctgtcagaacacaaacactccctcagcatgttactgtctgtcagaacacaa
>TU2085615
GTGTGCGTCATaaagagagaggaacacatggacACTGCCATCACATTTAACAagtcaaacattcaaatacctgGGATAGAAGGTAAAGTTAAAAACCCAAACCagtccgtgcatcaataccggtatatcgcTAAACACAGTCTACCGCCCAGCCCTACTCAGATCATTCATAGATTCACCTATTCATTGTTTTTATGGCGTTTGCTATTTTTTTATCTTTTTGGTATTTTCTGTGATGTTGTCAAGCTGTGCTGCACACACAACCACTAATGTTCCCTTCATGATAGTACACATCCTGTCTGTTCCCCAGTTCTGTTATGGAAAAGGTTCTGCGTTGTCATAAGCTGTTTGAAAACACGATGATAAACACTGTGAATAGATTCTAGGCATTTAACTTATGTAGTAGTTttacacaaacactccctcagtatgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctcagcatgttactgtctgtcagaacacaacaacacaaacactccctcagcatgttactgtctgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaaacactccctcagcctgttactgtatcagaacacaaacactccctcagcctgttactgtgtcagaacacaaacactccctcagcctgttactgtatcagaacacaaacactccctcagcatgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaaacactccctcagcatgttactgtctgtcagaacacaaacactccctcagcatgttactgtctgtcagaacacaa
>TU2085616
ctgtgtcagaacacaacacaaacactccctcagcctgttactgtctgtcagaacacaaacactccctcagcctgttactgtctgtcagaacacaacaacacaaacactccctcagcatgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaaacactccctcagcatgttactgtctgtcagaacacaaacactccctcagcatgttactgtctgtcagaacacaa
>TU2085612
GTGTGCGTCATaaagagagaggaacacatggacACTGCCATCACATTTAACAagtcaaacattcaaatacctgGGATAGAAGGTAAAGTTAAAAACCCAAACCagtccgtgcatcaataccggtatatcgcTAAACACAGTCTACCGCCCAGCCCTACTCAGATCATTCATAGATTCACCTATTCATTGTTTTTATGGCGTTTGCTATTTTTTTATCTTTTTGGTATTTTCTGTGATGTTGTCAAGCTGTGCTGCACACACAACCACTAATGTTCCCTTCATGATAGTACACATCCTGTCTGTTCCCCAGTTCTGTTATGGAAAAGGTTCTGCGTTGTCATAAGCTGTTTGAAAACACGATGATAAACACTGTGAATAGATTCTAGGCATTTAACTTATGTAGTAGTTttacacaaacactccctcagtatgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctcagcatgttactgtctgtcagaacacaacaacacaaacactccctcagcatgttactgtctgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaaacactccctcagcctgttactgtatcagaacacaaacactccctcagcctgttactgtgtcagaacacaaacactccctcagcctgttactgtatcagaacacaaacactccctcagcctgttactgtctatcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaaacactccctcagtatGTTACtctgtcagaacacaacaacacaaacactccctcagcatgttactgtatcagaacacaacaacacaaacactccctcagcctgttactgtctgtcagaacacaaacactccctcagcctgttattgtctgtcagaacacaacaacacaaacactccctcagcatgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctcagcatgttactgtctgtcagaacacaacaacacaaacactccctcagcatgttactgtctgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctca
>TU2085613
GTGTGCGTCATaaagagagaggaacacatggacACTGCCATCACATTTAACAagtcaaacattcaaatacctgGGATAGAAGGTAAAGTTAAAAACCCAAACCagtccgtgcatcaataccggtatatcgcTAAACACAGTCTACCGCCCAGCCCTACTCAGATCATTCATAGATTCACCTATTCATTGTTTTTATGGCGTTTGCTATTTTTTTATCTTTTTGGTATTTTCTGTGATGTTGTCAAGCTGTGCTGCACACACAACCACTAATGTTCCCTTCATGATAGTACACATCCTGTCTGTTCCCCAGTTCTGTTATGGAAAAGGTTCTGCGTTGTCATAAGCTGTTTGAAAACACGATGATAAACACTGTGAATAGATTCTAGGCATTTAACTTATGTAGTAGTTttacacaaacactccctcagtatgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctcagcatgttactgtctgtcagaacacaacaacacaaacactccctcagcatgttactgtctgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaaacactccctcagcctgttactgtatcagaacacaaacactccctcagcctgttactgtgtcagaacacaaacactccctcagcatgttactgtctgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctca
>TU2085618
cacaaacactccctcagcctgttactgtctatcagaacacaacaatacaaacactccctcagcctgttactgtatcagaacacaaacactccctcagcctgttactgtgtcagaacacaaacactccctcagcctgttactgtatcagaacacaaacactccctcagcctgttactgtctatcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaaacactccctcagtatGTTACtctgtcagaacacaacaacacaaacactccctcagcatgttactgtatcagaacacaacaacacaaacactccctcagcctgttactgtctgtcagaacacaaacactccctcagcatgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctcagcatgttactgtctgtcagaacacaacaacacaaacactccctcagcatgttactgtctgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctcagcctgttactgtgtcagaacacaacaacacaaacactccctca
>TU2085617
GTGTGCGTCATaaagagagaggaacacatggacACTGCCATCACATTTAACAagtcaaacattcaaatacctgGGATAGAAGGTAAAGTTAAAAACCCAAACCagtccgtgcatcaataccggtatatcgcTAAACACAGTCTACCGCCCAGCCCTACTCAGATCATTCATAGATTCACCTATTCATTGTTTTTATGGCGTTTGCTATTTTTTTATCTTTTTGGTATTTTCTGTGATGTTGTCAAGCTGTGCTGCACACACAACCACTAATGTTCCCTTCATGATAGTACACATCCTGTCTGTTCCCCAGTTCTGTTATGGAAAAGGTTCTGCGTTGTCATAAGCTGTTTGAAAACACGATGATAAACACTGTGAATAGATTCTAGGCATTTAACTTATGTAGTAGTTttacacaaacactccctcagtatgttactgtctatcagaacacaacaacacaaacactccctcagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2085614 False 387 lncRNA 0.45 2 1888208 1890006
TU2085615 False 970 TUCP 0.43 3 1888208 1891148
TU2085616 False 255 lncRNA 0.46 2 1888208 1888551
TU2085612 False 1339 TUCP 0.43 2 1889331 1891148
TU2085613 False 925 TUCP 0.43 3 1889331 1891148
TU2085618 False 631 TUCP 0.45 2 1889331 1890006
TU2085617 True 474 lncRNA 0.40 2 1890200 1891148

Neighbor

gene id symbol gene type direction distance location
LOC110515109 LOC106611092 coding downstream 331079 1517507 ~ 1557129 (-)
LOC110517589 LOC106577065 coding downstream 401596 1352981 ~ 1486612 (-)
LOC110515341 LOC106577436 coding downstream 543476 1305547 ~ 1344732 (-)
LOC118943914 NA coding downstream 995631 844436 ~ 892577 (-)
LOC118943822 NA coding upstream 5135 1896283 ~ 1896581 (-)
LOC118943847 NA coding upstream 358004 2246705 ~ 2249800 (-)
LOC110511972 LOC106613891 coding upstream 359368 2250516 ~ 2255447 (-)
LOC110519246 LOC106591225 coding upstream 431816 2322964 ~ 2324578 (-)
LOC118943863 arid5b coding upstream 496873 2388021 ~ 2493351 (-)
G1822080 NA non-coding downstream 3509 1883646 ~ 1884699 (-)
G1822060 NA non-coding downstream 19807 1868145 ~ 1868401 (-)
G1822058 NA non-coding downstream 20976 1867010 ~ 1867232 (-)
G1822045 NA non-coding downstream 100859 1786966 ~ 1787349 (-)
G1822039 NA non-coding downstream 107843 1780049 ~ 1780365 (-)
G1822098 NA non-coding upstream 23789 1914937 ~ 1923478 (-)
G1822109 NA non-coding upstream 40665 1931813 ~ 1932027 (-)
G1822110 NA non-coding upstream 41856 1933004 ~ 1933211 (-)
G1822229 NA non-coding upstream 49231 1940379 ~ 1940876 (-)
G1822265 NA non-coding upstream 134813 2025961 ~ 2027128 (-)
G1822025 NA other downstream 122671 1763993 ~ 1766638 (-)
G1821923 NA other downstream 374767 1502951 ~ 1513441 (-)
G1821682 NA other downstream 655941 1231836 ~ 1232267 (-)
G1820880 NA other downstream 1864724 22558 ~ 23484 (-)
G1822308 LOC106577261 other upstream 240164 2131312 ~ 2132511 (-)
G1822333 NA other upstream 309437 2200585 ~ 2250217 (-)
G1823141 NA other upstream 614419 2505567 ~ 2506443 (-)
LOC118943899 LOC106592999 other upstream 622170 2513318 ~ 2528846 (-)
LOC118943857 LOC106563104 other upstream 1391985 3281355 ~ 3325024 (-)

Expression


Co-expression Network