XLOC_037471 (PCDH8)


Basic Information

Item Value
gene id XLOC_037471
gene name PCDH8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 53707240 ~ 53719543 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073678
ATGCAGACCCGGCTCTCTCTCGCGCGGACACTCGGAGCCGCGCTGCTCTGGGCGGCGGTGCTGTGCGAGGAGCGGACAGTCCGGTATAAGATATCCGAAGAGGTTCGACCGCCTACAGTTATCGGAACACTCGCCAGCAATGTAACCTGGACTCCGGATAAAACGCGCAGGACTTTCCCTGGCATCAGGTTTAAGCTGATGAGTCCGTCAACCGGCTCCTTCATCCGATTTCGGGAAAGCGACGGGAGGCTGACGGCGGAGGAGCGCGTCGACCGCGAGCGCATCTGCAAGCGCAACCCGCGGTGCGTGATTACTTTTGACGTCGCCTTCGTGTCCGCCGAGCAGTTTGAGCTCTTCCATGTTGAAGTGGAAGTGCTGGATGTGAATGACAACTCTCCGGAGTTCCCGCGCGCAGAGTGCACCGTCGAGATCTCCGAGAGCGCGGCGCTGGGCACGCGCATCGCGCTGGACGCCGCTGAAGATTCAGACGTGGGTTCAAACTCCATCCAAAGCTACGAGCTAAGCGAGAACTCGCACTTCAGCATCGATGTCATCACGCGCGTGGATGGGGTTAAATATGCGGAGCTGGTGCTCGTCAAAGAGCTGGACAGAGAAGCGCGCGCTTTTTTCGCGCTCAAGCTGGTGGCGGCAGACGGAGGTCATCCGCCGAGGAGCGGCTCCACTAACGTGACCGTGAAAGTGAAGGACGCGAACGACAACAGCCCGCTGTTTGACCACAGCCACTACTCGGTGGACGTGCCGGAGGACACCCCTGTGGAGGCTCTACTGCTGGATCTGAACGCCATCGACCCAGATGAAGGACTTAATGGACAGGTCGTGTATGAATTTGGCAAACAAGTTACAACAGAAATCAGACAGCTGTTCAAACTGGATTACAAGACTGGATATTTGACATTACAAAGCCCTGTGGATTACGAAGACGAGACGACATATGAAATTGATGTGCAGGCTACTGATCTGGGGCACAACCCGGTGCCTTCAGTGTGCAAAATTATCATCAACATCAGAGATGTCAACGACAACCCTCCTGAAATCATCATCACGTCCATAACATCGGTGACCGACGGAGTTGCGCATGTTAGTGAAGCCACAGGTCCAGATATCCTGGTGGCTTTAATCAGCATCAAAGACAAGGACACCGGGGCGAACGGACAGGTGAGCTGCACTCTGAATGGAGGACATGGGAACTTCAGGCTTAAGAGAGCCTACGAGGGCAGCTACACCATCGTCACGATGGCTCCTCTGGACAGAGAGAAGATTGCGGAGTATAATCTGACGGTGGTGGCTGAGGACTTCGGTGTGCCTCCGTTACGCACGGTTACTCAATACATTATACGTCTGACAGACGTCAACGATAATGCCCCGGCGTTCAGTGCTAAGATATATGAAGGTTTCATTGAGGAGAATCAATTACCGGGTACTTACATCACAACAATTTTGGCTAGCGATCAGGATTCGGGATTGAATGGGGAAATAACCTACGAACTTTTTGACTCGGACACAAACAGCGTTTCCAGGTTTGCTATTATGAACCAAGCTGGGAACGTTTACGCGCTGCAGAGTTTCAATTACGAAGTCACAAAGAGGCTGGATTTACGCGTCCAGGCCAGCGACAGAGGATGGCCACAACTACACAACAACGCCATACTCATCATCAATGTAGTCGATCAGAACGACAACACTCCATTTATAACTCATCCGCCGCTCATTAACGGATCTGCTGAAATACAGCTTCCCCGAGACGCACCTCCCGGTTACATCGTAACGCGAATAATAGCTAAAGATTCAGACGCCGGTTTAAACGCAGAGCTCACTTATAAGATCTACGACGGAGGCGATTTTGGTTTCGCAATCGATCCGAATACTGGGGAAATATACATCAACCGCAAAATCACGTACGATGAGTACGATTTGTGGAAGGTCTTAGTGACGGTTAACGATAACGGCCAACCATCGCAAACGTCAACAGCCACGATTCATTTCACCCTAACCGAATCGGCACCCTCAAACGGCAACTTTTATGACGAAAGAGAGGAGGACGAGCCTAAACAATGGACGCTTGTTTTAATATTGGCTCTGACGACTTCCTCGCTGCTGTTTTTGGCTATTTTATCATTCATACTATGCAAAAGTCGTAAAAACAGTCCGAAGGGAAGCGATGACCTCCCTGAGGCATTGGATATCCCGTACTCTGATGAGAAAAACAGTGTGTCGATGATCTCAAACCAGACCGCCAATGTTTTCGAGACACACACTTTCCACTCCACGACCATCGACAGTCCTGAGAAGCTACACAGCAGTGTGCAGGCGACCGCTGAAGTCTTTAACGAAACCCCGCAGACCTTCAAGAGCAAATACAGGAGTGTGGCGGGGGATATCGATgGATATTCTACTTTACCTGGATATGGTAAAGACTCTGCTCGGCCAATCACAGTGTGGAAAGGAAACTCCATGATGACCATCGCTGTCAGAGATCCACAGATCAGCGGTAAAGACAGTGGAAAAGGAGACAGCGATGTTAATGACAGCGATTCTGACATCAGCGAAGGACTCAAGAAAGACTACACTACATATAAAGGTCTGTGGGCCTGTACCAGCGAGTGCCGTGTCCTCGGTCACTCCGACAGGTGCTGGAGTCCATCTGTAAGCAGATCCAGCGGGACCACCAACACCAGACATCTGTCTACCTTTTCCAGGACCAGGCCTCCGTCCCAGGGAACACTTCAGCGAAGTGGCTACGACACACAGACATCCCGCAGCGCCGCATTACAGAGCCTCACAGAAGACAACTATGACTACATCCACATCTGCTCTCCACACGCACACAGAAGACACGACACGGACAACAGAGACTCCAGCAAATCCATCAGCACAGAGCACAGTCCTGACTGA
>TCONS_00073679
GTCTGTGGGCCTGTACCAGCGAGTGCCGTGTCCTCGGTCACTCCGACAGGTGCTGGAGTCCATCTGTAAGCAGATCCAGCGGGACCACCAACACCAGACATCTGTCTACCTTTTCCAGGACCAGGCCTCCGTCCCAGGGAACACTTCAGCGAAGTGGCTACGACACACAGACATCCCGCAGCGCCGCATTACAGAGCCTCACAGAAGACAACTATGACTACATCCACATCTGCTCTCCACACGCACACAGAAGACACGACACGGACAACAGAGACTCCAGCAAATCCATCAGCACAGAGCACAGTCCTGACTGA

Function

symbol description
pcdh8 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including germ ring; margin; mesoderm; presumptive mesoderm; and retina. Orthologous to human PCDH8 (protocadherin 8).

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-242 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including germ ring; margin; mesoderm; presumptive mesoderm; and retina. Orthologous to human PCDH8 (protocadherin 8).

Ensembl:

ensembl_id ENSDARG00000102185

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073678 False 2913 mRNA 0.52 3 53707240 53719543
TCONS_00073679 True 314 mRNA 0.56 1 53719230 53719543

Neighbor

gene id symbol gene type direction distance location
XLOC_037470 CABZ01084081.1 coding upstream 61017 53637932 ~ 53646223 (+)
XLOC_037469 dct coding upstream 354558 53327332 ~ 53352682 (+)
XLOC_037468 sox21b coding upstream 429518 53276356 ~ 53277722 (+)
XLOC_037467 NA coding upstream 697181 53008689 ~ 53010059 (+)
XLOC_037466 CR753902.1 coding upstream 963177 52742196 ~ 52744063 (+)
XLOC_037472 cnmd coding downstream 5585 53725128 ~ 53744243 (+)
XLOC_037473 NA coding downstream 182446 53901989 ~ 53908885 (+)
XLOC_037474 tlr7 coding downstream 319463 54039006 ~ 54126873 (+)
XLOC_037475 tlr7 coding downstream 424454 54143997 ~ 54147134 (+)
XLOC_037476 CU914164.1 coding downstream 438844 54158387 ~ 54163896 (+)
XLOC_037465 NA non-coding upstream 1077954 52628244 ~ 52629286 (+)
XLOC_037461 NA non-coding upstream 1304819 52386540 ~ 52402421 (+)
XLOC_037460 CABZ01028277.1 non-coding upstream 1624803 52082311 ~ 52082437 (+)
XLOC_037459 NA non-coding upstream 1700805 51962485 ~ 52006435 (+)
XLOC_037480 NA non-coding downstream 575035 54294578 ~ 54302390 (+)
XLOC_037481 NA non-coding downstream 653548 54373091 ~ 54374908 (+)
XLOC_037483 NA non-coding downstream 722544 54442087 ~ 54442507 (+)
XLOC_037491 NA non-coding downstream 1502939 55222482 ~ 55236013 (+)

Expression


Co-expression Network