XLOC_037472 (cnmd)


Basic Information

Item Value
gene id XLOC_037472
gene name cnmd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 53725128 ~ 53744243 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073680
GTGTTTTCACAAGCCACAGAAAAACCCCAGGAGAGGAATTCCAGTCTTGAGTTTCTCCGGGATCCTGTTTATTTTGCCTGAAATGTTCCCCTCTCTCACCTACATGACAGAAACTGGAGAGACGCTTCACAAAGTCACAAAGCTCTTCTTTCAGTTCACGCAGGAACGCCATGGAGGAGACAGCGGAGAAAACTCCTGTCGAGGCTTACAGCACTCTGAAGCCCAAAGGactgatgaagatgaagaaaacGGCGCTCGTAGCCTTCATCGCCGGAGCTGCTCTGCTGCTGTCCGGAGGAGTCGGAGCGTTTTACCTGTGGAAAGTTACAGAGAAAGAAGCGATCAGCGCTCACCTGGGCAGAAACATCGATATAAAGATTGAAGATGATTCAGATTCTGCAGAGGGGACGATCGTGGAAGTTCAAGACTTTAAAGCTGGCATCACCGCCGTCAAGTTTCCCGGAAAAGAGAAATGCTTCATCAAATCACAAGCTAGAACTGAACTTTCTGAGGATGAAGCCGGAGTGAAAGCTGAGGTGGCGTCTCTGGTCTGGATCACTTCAGAAGAGCCACTGAAGGACAGCAGCTTCCTGAGCCCCGAAATACTGCGATTCTGTGCAGATCTGCCCATTTACTGGCACCACCCCGCAAACTCCAGAGcgctgaggaagaggaggagtgCGACACGAATGAGACGCCAGACTTCAGCTGGAATAAATCGACAACCGGCCAGGCGGAGAAACTCCACAGCTTCAGCCAGAGACGAGAGACCCACAGGGCCCGAATACAACCCAGAGAACCCCTATCATCAGAATCAGGGTTCGGAGGGCACCATGGTGTTCGACCCCATGCTGGATCATCGTGGGATCTGCTGTACTGAATGTCACCGCAGCTACACTCACTGCGAGCGGGTGTGCGAGCCTCTGGGCGGCTACTGGCCCTGGCCCTACAACTACCACGGCTGCCGGCCCGTCTGCAGGCTCATCATGCCCTGCCGCTGGTGGGCCGCTCGTGTGCTGGGGCTGGTGTAGGAGATCCAGACGCTTTACAGATAATCAGCATTTCAGCTCCAGAAGAGGAGGAGTGAGGGATTTCAACAAGTACATGTGCAATTAGAGAAGTGTCAGACATGggtgcaatgcaaaaaaaaaaagctttccttACTTAAAAGTTTGTCTTggtctagtccaaatatctagaaaGTCTTAAATTAAGAAGCTTTTATAGTGAAGCAAAAATAttctgttgttttcagaaataatcagTCGAAATGAACTGCAAAACTGCCAAAAATGCCtttctgtatttgtgtttttgtcttgtttctagttcaaatgtCTAGAAAGTCTTTAATCGCCATGCATTTCCTTAGACCAgcaaaaatattgtgttgttttcaggaaTAATGGGTCAAAATGAACTGCAAAACTGCAATAAATGTTTTTGTctgagagtttttgtcttgtttttagtccaaatatctagaaattattaaatcaagatgATTTGTCTAGAGAAACAAAAGAATATTGtgctgttttaagaaataatgagtcaaaatgaactGCAAAACTGCCAAAAAAGCTTTTCtgtttttgagtttttgtcttgtttgtatagtccaaatatctagaaaCTCTTAAATCACGATACATTTCCTTAGATGAgcaaaaatattgtgttgttttcagatataatgagtgaaaatgaactaaaaaactgcaacaaaaagttttt
>TCONS_00073681
CGCCATGGAGGAGACAGCGGAGAAAACTCCTGTCGAGGCTTACAGCACTCTGAAGCCCAAAGGactgatgaagatgaagaaaacGGCGCTCGTAGCCTTCATCGCCGGAGCTGCTCTGCTGCTGTCCGGAGGAGTCGGAGCGTTTTACCTGTGGAAAGTTACAGAGAAAGAAGCGATCAGCGCTCACCTGGGCAGAAACATCGATATAAAGATTGAAGATGATTCAGATTCTGCAGAGGGGACGATCGTGGAAGTTCAAGACTTTAAAGCTGGCATCACCGCCGTCAAGTTTCCCGGAAAAGAGAAATGCTTCATCAAATCACAAGCTAGAACTGAACTTTCTGAGGATGAAGCCGGAGTGAAAGCTGAGGTGGCGTCTCTGGTCTGGATCACTTCAGAAGAGCCACTGAAGGACAGCAGCTTCCTGAGCCCCGAAATACTGCGATTCTGTGCAGATCTGCCCATTTACTGGCACCACCCCGCAAACTCCAGAGcgctgaggaagaggaggagtgCGACACGAATGAGACGCCAGACTTCAGCTGGAATAAATCGACAACCGGCCAGGCGGAGAAACTCCACAGCTTCAGCCAGAGACGAGAGACCCACAGGGCCCGAATACAACCCAGAGAACCCCTATCATCAGCAGAATCAGGGTTCGGAGGGCACCATGGTGTTCGACCCCATGCTGGATCATCGTGGGATCTGCTGTACTGAATGTCACCGCAGCTACACTCACTGCGAGCGGGTGTGCGAGCCTCTGGGCGGCTACTGGCCCTGGCCCTACAACTACCACGGCTGCCGGCCCGTCTGCAGGCTCATCATGCCCTGCCGCTGGTGGGCCGCTCGTGTGCTGGGGCTGGTGTAGGAGATCCAGACGCTTTACAGATAATCAGCATTTCAGCTCCAGAAGAGGAGGAGTGAGGGATTTCAACAAGTACATGTGCAATTAGAGAAGTGTCAGACATGggtgcaatgcaaaaaaaaaaagctttccttACTTAAAAGTTTGTCTTggtctagtccaaatatctagaaaGTCTTAAATTAAGAAGCTTTTATAGTGAAGCAAAAATAttctgttgttttcagaaataatcagTCGAAATGAACTGCAAAACTGCCAAAAATGCCtttctgtatttgtgtttttgtcttgtttctagttcaaatgtCTAGAAAGTCTTTAATCGCCATGCATTTCCTTAGACCAgcaaaaatattgtgttgttttcaggaaTAATGGGTCAAAATGAACTGCAAAACTGCAATAAATGTTTTTGTctgagagtttttgtcttgtttttagtccaaatatctagaaattattaaatcaagatgATTTGTCTAGAGAAACAAAAGAATATTGtgctgttttaagaaataatgagtcaaaatgaactGCAAAACTGCCAAAAAAGCTTTTCtgtttttgagtttttgtcttgtttgtatagtccaaatatctagaaaCTCTTAAATCACGATACATTTCCTTAGATGAgcaaaaatattgtgttgttttcagatataatgagtgaaaatgaactaaaaaactgcaacaaaaagttttt
>TCONS_00073682
AGGCTTACAGCACTCTGAAGCCCAAAGGactgatgaagatgaagaaaacGGCGCTCGTAGCCTTCATCGCCGGAGCTGCTCTGCTGCTGTCCGGAGGAGTCGGAGCGTTTTACCTGTGGAAAGTTACAGAGAAAGAAGCGATCAGCGCTCACCTGGGCAGAAACATCGATATAAAGATTGAAGATGATTCAGATTCTGCAGAGGGGACGATCGTGGAAGTTCAAGACTTTAAAGCTGGCATCACCGCCGTCAAGTTTCCCGGAAAAGAGAAATGCTTCATCAAATCACAAGCTAGAACTGAACTTTCTGAGGTGAGAAACTTTCATCGttttataaaacatcactaaaACAACTATATAAGTAGCTCAAGTGTGCCCGCTCTGACCCCATCGAGAATATCAAAACAAATGACTAAAACAGTCGCTCAGAAATTAATCTACACGTCCATCATCATTTTGCATAAACCTCAGAAACACATCTGCttcataattaaacataattgaGATAATTAAACCTGtttaaatcagaaaacaattCATTAGCTGTAGCTACAAATAAACTTTCTCATCAGGCATGTACAGACTGTCCCTCTCTAAATAATCCAGCTGGAGTGTGTGATTAACATCATTATATAGAACAATATACTGGCTTCCTGGACACGCCCACACCTAATGTCAGTCAAACAATTCACAATTCACAACCAAATTATGTTTGTTACAAGTTACTGCCAGATTCGTGCTTATTAGAATATAAATATTAGATGGAAAATTTGCATAT

Function

symbol description
cnmd Predicted to be involved in several processes, including endothelial cell morphogenesis; negative regulation of endothelial cell proliferation; and negative regulation of vascular endothelial growth factor receptor signaling pathway. Predicted to act upstream of or within cartilage development and cell differentiation. Predicted to be located in endomembrane system; extracellular region; and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cartilage element; cranium; head mesenchyme; hypochord; and lapillus. Orthologous to human CNMD (chondromodulin).

GO:

id name namespace
GO:0030948 negative regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0051216 cartilage development biological_process
GO:0016525 negative regulation of angiogenesis biological_process
GO:0001886 endothelial cell morphogenesis biological_process
GO:0001937 negative regulation of endothelial cell proliferation biological_process
GO:0005576 extracellular region cellular_component
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-010713-1 Predicted to be involved in several processes, including endothelial cell morphogenesis; negative regulation of endothelial cell proliferation; and negative regulation of vascular endothelial growth factor receptor signaling pathway. Predicted to act upstream of or within cartilage development and cell differentiation. Predicted to be located in endomembrane system; extracellular region; and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cartilage element; cranium; head mesenchyme; hypochord; and lapillus. Orthologous to human CNMD (chondromodulin).

Ensembl:

ensembl_id ENSDARG00000100133

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073680 False 1737 mRNA 0.45 7 53725128 53744243
TCONS_00073681 False 1574 mRNA 0.45 7 53725294 53744243
TCONS_00073682 True 777 lncRNA 0.40 3 53725410 53734368

Neighbor

gene id symbol gene type direction distance location
XLOC_037471 PCDH8 coding upstream 5585 53707240 ~ 53719543 (+)
XLOC_037470 CABZ01084081.1 coding upstream 78905 53637932 ~ 53646223 (+)
XLOC_037469 dct coding upstream 372446 53327332 ~ 53352682 (+)
XLOC_037468 sox21b coding upstream 447406 53276356 ~ 53277722 (+)
XLOC_037467 NA coding upstream 715069 53008689 ~ 53010059 (+)
XLOC_037473 NA coding downstream 157746 53901989 ~ 53908885 (+)
XLOC_037474 tlr7 coding downstream 294763 54039006 ~ 54126873 (+)
XLOC_037475 tlr7 coding downstream 399754 54143997 ~ 54147134 (+)
XLOC_037476 CU914164.1 coding downstream 414144 54158387 ~ 54163896 (+)
XLOC_037477 tmsb4x coding downstream 434232 54178475 ~ 54180059 (+)
XLOC_037465 NA non-coding upstream 1095842 52628244 ~ 52629286 (+)
XLOC_037461 NA non-coding upstream 1322707 52386540 ~ 52402421 (+)
XLOC_037460 CABZ01028277.1 non-coding upstream 1642691 52082311 ~ 52082437 (+)
XLOC_037459 NA non-coding upstream 1718693 51962485 ~ 52006435 (+)
XLOC_037480 NA non-coding downstream 550335 54294578 ~ 54302390 (+)
XLOC_037481 NA non-coding downstream 628848 54373091 ~ 54374908 (+)
XLOC_037483 NA non-coding downstream 697844 54442087 ~ 54442507 (+)
XLOC_037491 NA non-coding downstream 1478239 55222482 ~ 55236013 (+)

Expression


Co-expression Network