G1822299


Basic Information

Item Value
gene id G1822299
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 2097317 ~ 2104679 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2085897
tttgtctgtcatagctgaagtgtacctgtgatgaaaattacaggcctctctcatttttttaaaGTGGGGagtaccctgctgtctgactaagtgctacggtactattaccctgctgtctgactaagtgctacggtactattaccctgctgtctgacttagtgctacgctacggtactattaccctgctgtctgacttagtgctacggtcctattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacagtactattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacggtcatattaccctgctgtctgactttgtgctactactaccaccaccactactaatactactactacacctaacaccaccactaccacacctaacaccactacacttac
>TU2085894
ggtactattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacggtactattaccctgctgtcgcacttagtgctacggtactattaccctgctgtctgacttagtgctacggtcctattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacggtcctattaccctgctgtctgacttagtgctacgctacggtactattaccctgctgtctgacttagtgctacgctacggtactattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacggtcctATTAcactgctgtctgactta
>TU2085895
tttgtctgtcatagctgaagtgtacctgtgatgaaaattacaggcctctctcatttttttaaaGTGGGGagtaccctgctgtctgactaagtgctacggtactattaccctgctgtctgacttagtgctacgctacggtactattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacggtactattaccctgctgtctgacttagtgctacggtcctATTAcactgctgtctgactta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2085897 False 585 lncRNA 0.46 3 2097317 2104679
TU2085894 False 479 lncRNA 0.48 2 2098900 2099616
TU2085895 True 333 lncRNA 0.46 2 2098900 2104679

Neighbor

gene id symbol gene type direction distance location
LOC110516366 reep3 coding downstream 184647 1872701 ~ 1912670 (-)
LOC118943822 NA coding downstream 200736 1896283 ~ 1896581 (-)
LOC110515109 LOC106611092 coding downstream 540188 1517507 ~ 1557129 (-)
LOC110517589 LOC106577065 coding downstream 610705 1352981 ~ 1486612 (-)
LOC110515341 LOC106577436 coding downstream 752585 1305547 ~ 1344732 (-)
LOC118943847 NA coding upstream 144473 2246705 ~ 2249800 (-)
LOC110511972 LOC106613891 coding upstream 145837 2250516 ~ 2255447 (-)
LOC110519246 LOC106591225 coding upstream 218285 2322964 ~ 2324578 (-)
LOC118943863 arid5b coding upstream 283342 2388021 ~ 2493351 (-)
LOC118943899 LOC106592999 coding upstream 409300 2513318 ~ 2528846 (-)
G1822269 NA non-coding downstream 64199 2032260 ~ 2033118 (-)
G1822265 NA non-coding downstream 70189 2025961 ~ 2027128 (-)
G1822229 NA non-coding downstream 156441 1940379 ~ 1940876 (-)
G1822110 NA non-coding downstream 164106 1933004 ~ 1933211 (-)
G1822109 NA non-coding downstream 165290 1931813 ~ 1932027 (-)
G1822320 LOC106592091 non-coding upstream 52280 2156959 ~ 2157433 (-)
G1822328 NA non-coding upstream 63697 2168376 ~ 2169018 (-)
G1822357 NA non-coding upstream 155779 2260458 ~ 2260708 (-)
G1822369 NA non-coding upstream 174363 2279042 ~ 2279594 (-)
G1822081 NA other downstream 206169 1888208 ~ 1891148 (-)
G1822025 NA other downstream 331780 1763993 ~ 1766638 (-)
G1821923 NA other downstream 583876 1502951 ~ 1513441 (-)
G1821682 NA other downstream 865050 1231836 ~ 1232267 (-)
G1822308 LOC106577261 other upstream 26633 2131312 ~ 2132511 (-)
G1822333 NA other upstream 95906 2200585 ~ 2250217 (-)
G1823141 NA other upstream 400888 2505567 ~ 2506443 (-)
LOC118943857 LOC106563104 other upstream 1178454 3281355 ~ 3325024 (-)

Expression


Co-expression Network