G1823337 (LOC106593456)


Basic Information

Item Value
gene id G1823337
gene name LOC106593456
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 2909805 ~ 2910685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2087353
GTGTCCTGGAGGTCGTTGCCCTCAGCACTCAGACTGCGGCCAGGTGTCGGGGGCTCCACGTTCACACTGGACGTCTCACTATGCCAACCTGCAGGTGATGACATCACATCTTTGTCTGCCTGCTGAACCTGAGACAAGATGGCGTTTATCCTTTCCTCCGTCATCTCCTCGTCCTCCGAGCCTTCCTCCAGCCCCATCTCCTCCAACAGAGACTTTAACTTCTCCTCACTcaactccccctcctccttctcttccccggGAGGACCAGACACAccaccctctaccccctctccccccaGGGCAGGCCTAAAGCCTAGGGTCTCTGATGGGTCTCCTCTGGCTCCTGCCAGCCACTCATCCTCCCTGACCACCCCCTGAGGAAGATCAATCTGATGTATCAGCATCCCCATGTCAACATCctgctcagcctcctctctcagccctGCCTCCCTGTTATGGGGCTTGTATGAGGCCACTGACTCTCTGCTAACCCCTGTGTCATCTTCAGTGGAGGTCACTTTAGGGCCCCCGCCTTCCCCGGCACCCTCCCCGGCGCCCTTCCCGGCTCCCCGGGAGTCTAGAGGTCCAGAGGTGTCTTCCTCTACCACCATTGTGGGGGATTGAGCATGGGAGGCGGGGCCTGGGGTGCTGGTGGTCTGGGTGAGTGACAAGTCACATGGTCTAGTGGGCGTTCTAGAGGGGGAGTCTAGGCCAGCGTCCTCGTCAAAGAAGTGGTCGCTGCTTAGCGGGGTGGGGGGCTGACAGATCAAACCTGTGGGGGTCTGAAGCTCCAGCTGGATGCTGCTGGAACCTGGATGAGATGAGATGGAGGGACACAACAACATGAAGACACTCAGCATG

Function

NR:

description
ankyrin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2087353 True 861 lncRNA 0.59 2 2909805 2910685

Neighbor

gene id symbol gene type direction distance location
LOC110510403 LOC106591053 coding downstream 157930 2738091 ~ 2751875 (-)
LOC118943899 LOC106592999 coding downstream 380959 2513318 ~ 2528846 (-)
LOC118943863 arid5b coding downstream 416454 2388021 ~ 2493351 (-)
LOC110519246 LOC106591225 coding downstream 585227 2322964 ~ 2324578 (-)
LOC110511972 LOC106613891 coding downstream 654358 2250516 ~ 2255447 (-)
LOC110531337 LOC105026297 coding upstream 21884 2932569 ~ 2963524 (-)
LOC110518872 LOC106594258 coding upstream 67381 2978066 ~ 3007599 (-)
LOC110518874 LOC105026292 coding upstream 99019 3009704 ~ 3012943 (-)
LOC110518781 entpd1 coding upstream 189879 3100564 ~ 3172786 (-)
trnal-uaa-60 NA coding upstream 265374 3176059 ~ 3176131 (-)
G1823312 NA non-coding downstream 39145 2869847 ~ 2870660 (-)
G1823306 NA non-coding downstream 54732 2853613 ~ 2855073 (-)
G1823304 NA non-coding downstream 64922 2843956 ~ 2844883 (-)
G1823302 NA non-coding downstream 65894 2843435 ~ 2843911 (-)
G1823297 NA non-coding downstream 70516 2838453 ~ 2839289 (-)
G1823340 NA non-coding upstream 5577 2916262 ~ 2918740 (-)
G1823342 NA non-coding upstream 14047 2924732 ~ 2925612 (-)
G1823324 NA non-coding upstream 33174 2943859 ~ 2948713 (-)
G1823349 NA non-coding upstream 49704 2960389 ~ 2960656 (-)
G1823331 NA non-coding upstream 61259 2971944 ~ 2973007 (-)
G1823141 NA other downstream 403362 2505567 ~ 2506443 (-)
G1822333 NA other downstream 659588 2200585 ~ 2250217 (-)
G1822308 LOC106577261 other downstream 777294 2131312 ~ 2132511 (-)
G1822081 NA other downstream 1018657 1888208 ~ 1891148 (-)
LOC118943857 LOC106563104 other upstream 372448 3281355 ~ 3325024 (-)
G1823530 NA other upstream 594892 3505577 ~ 3506272 (-)
LOC118943921 LOC106600605 other upstream 644328 3553536 ~ 3601859 (-)
LOC118943842 LOC106577176 other upstream 880346 3791031 ~ 3820702 (-)
G1823691 NA other upstream 933808 3844493 ~ 3846920 (-)

Expression


Co-expression Network