G1823442


Basic Information

Item Value
gene id G1823442
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 3214293 ~ 3215954 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2087488
cattaatgccttcctttgggaatcaaaagattccatagcctagttgttatcaagttcacttaagacgcaaaatgtatacttttcgatgctgggcggaaacagaggtctctgacacatgtgagaagtactgtatttgtaacagagaattttcataaatgcattatgttggaatttcgaatttgtgcgatgaatatatgtacaatttggtttactccacagtaataattctagcagcagtttctctagtttagtagttatcaagattgctttacacacgaatggtccccggttcgaagccgggcggaaacagttctctatgacaaatccagtaagtactgtatttgtaacagagaataatTGTTCTAATATATGCCgtattttggaaattcgaatacatgcaataaatatttgtaaaatttggtttactccttgctgataactaatgcagcagtttctgtagtgtagtgtttatcacgTTCGTCTTACATGCGAAAGGTCTGTGGTTCAAAACCTGGCAGAAACAGTgctctttgacacatgcagttAGTGCTGTATCAACAACAGAGAATATATATTCtcatgaatgtttttttttggaaattcgaatacatgcaatgaatataTGTAAAACTTGGGTtactccttgctgataatactagcagcagtttctgtagtgtagtggttatcacgttcgctttacacgcgaaaagtccctggttcgaaaccgggcggaaacagtcctctttgacaaatccaataagtactgtatttgtaacagagaataaCTGTTCTAATAAATGCCgtattttggaaattcgaatgcatgcaatgaatatctgtaaaactcgggttgctccttgctgataatactagcagcagtttctgtagtgtagtggttatcacgttcgctttacatgcgaaaggtccctggtttgaaaccgggcggaaacagacCTCTTTGATACATGCAGTAAGTACCGTATTTATAAAAGAGATGAGTTGctttcataaataccttattCTGGAAATTCAAATACATGCACTGACTATAAGAAAATTCAGTTTACTTCTTGCAGGTATCTCAAGCAGAAGTTTCTGTAATGTAGCTCTTATCACGTGCGCTTAACATgcaaaaggtccctggtttgaacctctgtggaaacagcactcgttgatacattcaataagtaccattgttgaaactgaaaaatacatttttcattaatgccttcctttgggaatcaaaagattccatagcctagttgttatcaagttcacttaagacgcaaaatgtatacttttcgatgctgggcggaaacagaggtctctgacacatgtgagaagtactgtatttgtaacagagaattttcataaatgcattatgttggaatttcgaatttgtgcgatgaatatatgtacaatttggtttactccacagtaataattctagcagcagtttctctagtttagtagttatcaagattgctttacacacgaatggtccccggttcgaagccgggcggaaacagttctctatgacaaatccagtaagtactgtatttgtaacagagaataaCTGTTCTAATAAATGCCgtattttggaaattcgaatgcatgcaatgaatatctgtaaaactcgggttgctccttgctgataatact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2087488 True 1662 lncRNA 0.37 1 3214293 3215954

Neighbor

gene id symbol gene type direction distance location
trnav-uac-63 NA coding downstream 8 3214213 ~ 3214285 (-)
trnav-uac-62 NA coding downstream 436 3213785 ~ 3213857 (-)
trnav-uac-61 NA coding downstream 1227 3212994 ~ 3213066 (-)
trnav-uac-60 NA coding downstream 1655 3212566 ~ 3212638 (-)
trnav-uac-59 NA coding downstream 2446 3211775 ~ 3211847 (-)
trnav-uac-66 NA coding upstream 269 3216223 ~ 3216295 (-)
trnav-uac-67 NA coding upstream 1060 3217014 ~ 3217086 (-)
trnav-uac-68 NA coding upstream 1589 3217543 ~ 3217615 (-)
trnav-uac-69 NA coding upstream 2017 3217971 ~ 3218043 (-)
trnav-uac-70 NA coding upstream 2913 3218867 ~ 3218939 (-)
G1823441 NA non-coding downstream 1981 3212018 ~ 3212312 (-)
G1823439 NA non-coding downstream 6408 3203361 ~ 3207885 (-)
G1823435 NA non-coding downstream 31477 3182575 ~ 3182816 (-)
G1823434 NA non-coding downstream 31780 3181954 ~ 3182513 (-)
G1823433 NA non-coding downstream 33101 3180973 ~ 3181192 (-)
G1823443 NA non-coding upstream 1150 3217104 ~ 3217386 (-)
G1823445 NA non-coding upstream 11918 3227872 ~ 3228326 (-)
G1823449 NA non-coding upstream 32767 3248721 ~ 3251104 (-)
G1823450 NA non-coding upstream 37179 3253133 ~ 3253444 (-)
G1823453 NA non-coding upstream 40791 3256745 ~ 3265966 (-)
LOC118943899 LOC106592999 other downstream 697370 2513318 ~ 2528846 (-)
G1823141 NA other downstream 707850 2505567 ~ 2506443 (-)
G1822333 NA other downstream 964076 2200585 ~ 2250217 (-)
G1822308 LOC106577261 other downstream 1081782 2131312 ~ 2132511 (-)
G1822081 NA other downstream 1323145 1888208 ~ 1891148 (-)
LOC118943857 LOC106563104 other upstream 67179 3281355 ~ 3325024 (-)
G1823530 NA other upstream 289623 3505577 ~ 3506272 (-)
LOC118943921 LOC106600605 other upstream 339059 3553536 ~ 3601859 (-)
LOC118943842 LOC106577176 other upstream 575077 3791031 ~ 3820702 (-)
G1823691 NA other upstream 628539 3844493 ~ 3846920 (-)

Expression


Co-expression Network