G1823453


Basic Information

Item Value
gene id G1823453
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 3256745 ~ 3265966 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2087500
AAAAAAACCTTCACCAACCTACCActcttctaaaatattttttggagacacccaccagcacccccaacggacgagaaccttttttctccaactactctggggaccccgaccttggcgactcccccgcagcgattACGCCCTAAGCAATTAGGCCCttccatacaccaagcaagaagacaggaggatatggatagaccggactccttcgggacctcTCGGGGTTCTGTTGGCAGACCAATCGGCTCAACCTTCCTAGCCCCATTACATACGGGAGAGTCACGTAACGCGCTGAACGACTATCTACCCCAGTTTAGAATTGGAttggcagtatgttcagtagCGCGTGGGTGGTCCTAGCGGGCTGGGGCAGTTAAATCTTCCAAAACAGGGGCTTTGGGTgaggcgctgcggctggaggactcgcattggccgtgtaatccctggggtgcccagataatgtctggcggagaattggatcccacggaataattcccctggggggatcccttaccccgccgtacttagcctggacaaccgatccacttgtttgacctggactacgaacaaattcactgtctagggaggatatacctctggagacgttacgatcctggaagggagtaacttcactggtcactatcacccaaaaccactgaatcacttacgactgagatggtggggatggaaacacccaattaacttctactactgccggacgtttcatacgtaagccagagaaggtttgccggttcctaaaccctccatacacctaccgaaacacaggacgaaACTCCAAGGGTAGTTtaaagactgaccacttgacagggacacatggcaaccgactgaggtccggacctgcacaaggtacgcaactcgatggttttgcctgatcctacgccgagtatacccatacagaccagctggatttgactagacatgggttaatttggaattaggatcctggaagggaataactcctaattacacacatgattgaaaacatccaggaccaaagactgacgaacactgaagtaaatacatagacaacatggagctaaaaaaaagaaggatccgaaagagagtaaactcctaagttgcactatgccttccacttccgttgacatagcggaccaagacatcatgaccataccactcgacatggacacatggcaaccaaccgaggaccggacctgcataaggtacgcaactcaagggttttgcctgatcctaagttgagttgacagacttacctaaaccattctgaaatactatacctagccttaaccctaaacctaactctaaccttaacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2087500 True 1310 lncRNA 0.49 2 3256745 3265966

Neighbor

gene id symbol gene type direction distance location
trnav-uac-97 NA coding downstream 16785 3239888 ~ 3239960 (-)
trnav-uac-96 NA coding downstream 17863 3238810 ~ 3238882 (-)
trnav-uac-95 NA coding downstream 21932 3234741 ~ 3234813 (-)
trnav-uac-94 NA coding downstream 22794 3233879 ~ 3233951 (-)
trnav-uac-93 NA coding downstream 23008 3233665 ~ 3233737 (-)
LOC118943857 LOC106563104 coding upstream 15389 3281355 ~ 3325024 (-)
LOC110514665 LOC106577322 coding upstream 59074 3325040 ~ 3520011 (-)
LOC118943858 NA coding upstream 158481 3424368 ~ 3425279 (-)
LOC118943909 NA coding upstream 273649 3539615 ~ 3541320 (-)
LOC118943921 LOC106600605 coding upstream 290017 3553536 ~ 3601859 (-)
G1823450 NA non-coding downstream 3301 3253133 ~ 3253444 (-)
G1823449 NA non-coding downstream 5641 3248721 ~ 3251104 (-)
G1823445 NA non-coding downstream 28419 3227872 ~ 3228326 (-)
G1823443 NA non-coding downstream 39359 3217104 ~ 3217386 (-)
G1823442 NA non-coding downstream 40791 3214293 ~ 3215954 (-)
G1823478 NA non-coding upstream 75707 3341673 ~ 3344235 (-)
G1823485 NA non-coding upstream 96717 3362683 ~ 3363028 (-)
G1823488 NA non-coding upstream 102571 3368537 ~ 3369334 (-)
G1823501 NA non-coding upstream 137241 3403207 ~ 3403568 (-)
LOC118943899 LOC106592999 other downstream 739822 2513318 ~ 2528846 (-)
G1823141 NA other downstream 750302 2505567 ~ 2506443 (-)
G1822333 NA other downstream 1006528 2200585 ~ 2250217 (-)
G1822308 LOC106577261 other downstream 1124234 2131312 ~ 2132511 (-)
G1822081 NA other downstream 1365597 1888208 ~ 1891148 (-)
G1823530 NA other upstream 239611 3505577 ~ 3506272 (-)
LOC118943842 LOC106577176 other upstream 525065 3791031 ~ 3820702 (-)
G1823691 NA other upstream 578527 3844493 ~ 3846920 (-)

Expression


Co-expression Network