G1823565


Basic Information

Item Value
gene id G1823565
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 3594629 ~ 3598267 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2087653
CATATCTGACTGCCATCCATACAAGATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACAGCACATATGACTGCCATCCATACAATATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCATCCATACAATATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACACAGCACATATCTGACT
>TU2087654
ACAAGATCTAACCACCAATAGGAGCCCACAGCACATATCTGACTGCCATCCATACAAGATCTAACCACCAATAGGAGCCCACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCATCCATACAAGATCTAACCACCAATAGGAGCCCACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCATCCATACAAGATCTAACCACCAATAGGAGCACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACAGCACATATGACTGCCATCCATACAATATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCATCCATACAATATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACACAGCACATATCTGACT
>TU2087655
TCAGGGCGGGGCAGCCGGGGACAGGTAGGTAGTTACAGCAGCCCCCGTGTCCTCATGCAGCTGGAGTAGTGCCTTTCAGGGCGGGGCAGCTGGCTGCACTTCCATGGTCAACTGACTCTCAGATTCAGGAATTTAACATGATGACGCAAAGGCAATTAACACCTGACAGAGAGAATATTgtcagggtacacacacacacacacacacacacacacactatgttcttctatcctcgtggggacctcAAATATATTTCCATtccaaatcctattttccctaatccttccataaccataaccttaacccgtAAACCTAACTCTTAAAGCTAACCCCTTACACatattctaaccctaaccactaaacactaatccttaccataaccttaacccgtAAACCTAACTCTTAAAGCTAACCCCTTACACAAATTCTAACcctaaccactaaacactaatcctaaccccttacacaaattctaaccctaaccactaaacactAACCCATTACacaaattctaaccctaaccactaaacactAACCCcttacactaattctaaccctaaccactaaacactAACCTCCTAAATTTAAATTAGCCTTTGTCTTCAGGGGGATTAGGGTTAATTTTCCttattttactatccttgtggggacgtTTGGGGATTTTAATGTCCCAGAAccagcagagagacacacacactccttttaTAGAGACGACTGACCTAGTGTCTGACATGTTGTCCAGTAGAGGTTGCTCTTATGCAGGTATCTGTGTAAAACACCACTGTAGGACTTTGGTCAGACGTTTTTAATCCAAAGATACTTAAAATACAGTAGTGACTGTGTCCATTTTTGTCATGTGTCTGTGGTCACATGAGGGAATTGAACCCTTGACCTTTGGCTGCTAGCGCCACTCAGAACCACATGAGTACCACcaatagggctgggcgatatagcCCAAATATCATATTTCTATATTTGTCTTTATTTTGATTGTATGGCGGTATGTTACTATGTTTCTGAATTAGTTTTATGACGAGTGCATGGACCCTAGACCGGCAACAAATGAATTCTACGTGTTTTTGAATGGTCTTTCTCCATGCTGATGGGTTTTCCACTCAACCCAGCCAGGACAGAACTGACAGCTAAGTAGTCCAATTAGTTGAACTTTTCAGTTATTTAACACGGTATAAAAATACCTTTTTTTCTATTTTATAGAGGGTATTGTACCAATCTGTAGATCCCTACCTGTATACTGGGACTCGTGATACATGGTCCTTGTATGTGGCTTCATTCATGTGTGTTTTATCCCTCCTGTTATTACTTTGGGAAGGACTCGTCAGGAAAGCATTTCTCGCTGATGTCTAAACCCTTTAGATTCaccacgtgacaaatacaatttttttaTTACATGTAATATATCGCCAATATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCATCCATACAATATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACACAGCACATATCTGACT
>TU2087656
TCAGGGCGGGGCAGCCGGGGACAGGTAGGTAGTTACAGCAGCCCCCGTGTCCTCATGCAGCTGGAGTAGTGCCTTTCAGGGCGGGGCAGCTGGCTGCACTTCCATGGTCAACTGACTCTCAGATTCAGGAATTTAACATGATGACGCAAAGGCAATTAACACCTGACAGAGAGAATATTgtcagggtacacacacacacacacacacacacacacactatgttcttctatcctcgtggggacctcAAATATATTTCCATtccaaatcctattttccctaatccttaccttaaccttaacccgtAAACCTAACTCTTAAAGCTAACCCCTTACacaaattctaaccctaaccactaaacactAACCCcttacactaattctaaccctaaccactaaacactAATCCcttacactaattctaaccctaaccactaaacactaatcctaaccccttacacaaattctaaccctaaccactaaacactAACCCcttacactaattctaaccctaaccactaaacactAACCCcttacactaattctaaccctaaccactaatcctaaccccttacacaaattctaaccctaaccactaaacactAACCCcttacactaattctaaccctaaccactaatcctaaccccttacacaaattctaaccctaaccactaaacactAACCCcttacactaattctaaccctaaccactaaacactaatcctaaccccttacacaaattctaaccctaaccactaaacactAACCCATTACacaaattctaaccctaaccactaaacactAACCCcttacactaattctaaccctaaccactaaacactAACCTCCTAAATTTAAATTAGCCTTTGTCTTCAGGGGGATTAGGGTTAATTTTCCttattttactatccttgtggggacgtTTGGGGATTTTAATGTCCCAGAAccagcagagagacacacacactccttttaTAGAGACGACTGACCTAGTGTCTGACATGTTGTCCAGTAGAGGTTGCTCTTATGCAGGTATCTGTGTAAAACACCACTGTAGGACTTTGGTCAGACGTTTTTAATCCAAAGATACTTAAAATACAGTAGTGACTGTGTCCATTTTTGTCATGTGTCTGTGGTCACATGAGGGAATTGAACCCTTGACCTTTGGCTGCTAGCGCCACTCAGAACCACATGAGTACCACcaatagggctgggcgatatagcCCAAATATCATATTTCTATATTTGTCTTTATTTTGATTGTATGGCGGTATGTTACTATGTTTCTGAATTAGTTTTATGACGAGTGCATGGACCCTAGACCGGCAACAAATGAATTCTACGTGTTTTTGAATGGTCTTTCTCCATGCTGATGGGTTTTCCACTCAACCCAGCCAGGACAGAACTGACAGCTAAGTAGTCCAATTAGTTGAACTTTTCAGTTATTTAACACGGTATAAAAATACCTTTTTTTCTATTTTATAGAGGGTATTGTACCAATCTGTAGATCCCTACCTGTATACTGGGACTCGTGATACATGGTCCTTGTATGTGGCTTCATTCATGTGTGTTTTATCCCTCCTGTTATTACTTTGGGAAGGACTCGTCAGGAAAGCATTTCTCGCTGATGTCTAAACCCTTTAGATTCaccacgtgacaaatacaatttttttaTTACATGTAATATATCGCCAATATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCATCCATACAATATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACACAGCACATATCTGACTGCCGTCCATACAAGATCTAACCACCAATAGGAGCACACAGCACATATCTGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2087653 False 378 lncRNA 0.46 2 3594629 3595061
TU2087654 False 727 lncRNA 0.46 3 3594629 3595518
TU2087655 False 1624 lncRNA 0.42 6 3594629 3598267
TU2087656 True 1891 lncRNA 0.41 5 3594629 3598267

Neighbor

gene id symbol gene type direction distance location
LOC118943909 NA coding downstream 53309 3539615 ~ 3541320 (-)
LOC110514665 LOC106577322 coding downstream 74618 3325040 ~ 3520011 (-)
LOC118943858 NA coding downstream 169779 3424368 ~ 3425279 (-)
LOC118943857 LOC106563104 coding downstream 269605 3281355 ~ 3325024 (-)
trnav-uac-97 NA coding downstream 354669 3239888 ~ 3239960 (-)
LOC118936584 LOC106577178 coding upstream 87340 3685607 ~ 3693195 (-)
LOC118943842 LOC106577176 coding upstream 192772 3791031 ~ 3820702 (-)
LOC118936586 pex13 coding upstream 223022 3821289 ~ 3830217 (-)
rel LOC106577316 coding upstream 269789 3868056 ~ 3895511 (-)
LOC110531464 alb1 coding upstream 302635 3900902 ~ 3914858 (-)
G1823558 NA non-coding downstream 15552 3578196 ~ 3579077 (-)
LOC118943921 LOC106600605 non-coding downstream 33582 3553536 ~ 3601859 (-)
G1823532 NA non-coding downstream 77593 3516211 ~ 3517036 (-)
G1823516 NA non-coding downstream 141581 3450424 ~ 3453048 (-)
G1823515 NA non-coding downstream 144817 3448985 ~ 3449812 (-)
G1823569 NA non-coding upstream 13801 3612068 ~ 3613138 (-)
G1823573 NA non-coding upstream 27045 3625312 ~ 3625539 (-)
G1823574 NA non-coding upstream 27425 3625692 ~ 3659004 (-)
G1823575 NA non-coding upstream 29504 3627771 ~ 3667966 (-)
G1823586 NA non-coding upstream 49667 3647934 ~ 3650649 (-)
G1823530 NA other downstream 88357 3505577 ~ 3506272 (-)
LOC118943899 LOC106592999 other downstream 1077706 2513318 ~ 2528846 (-)
G1823141 NA other downstream 1088186 2505567 ~ 2506443 (-)
G1823691 NA other upstream 246226 3844493 ~ 3846920 (-)
G1823705 NA other upstream 305454 3903721 ~ 3906049 (-)
G1823710 NA other upstream 335626 3933893 ~ 3936043 (-)
G1824125 NA other upstream 1063324 4661591 ~ 4662234 (-)

Expression


Co-expression Network