G1823642


Basic Information

Item Value
gene id G1823642
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 3878206 ~ 3881717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2087763
ATCCCCGGGTCTCTGCAGCAAAGTGTCGTTGTTGTCTCCATTACAAGACAAGAGCTAACCTGCTTCCCCATTTTCATAACACACAGTTGTAGTGCTGGATACCAcgtgagagagggggatgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgctgaaGGTGTGCAGCCTCTGATAACATTGAAAACATGAAGTACTACCATACAAGCCATTGTACTGATTGGGCAGTACTACCGTACAAGCCATTGTACTGATTGGGCAGTACTACTATACAAGCCATTGTACTGATTGGGCAGTACTACTATACAAGCCATTGTAATGGTATAtagataccgtcctgtaggttttctgtccagccctgttcctggagagatacctccAGGTTctctagattagggttggagttataacctactggacagtagctctccaagaacagggttggagttataacctactggacagtagctctccaagaacagggttggagttataacctactggacagtagctctccaggaacagggttggagttaaaacctactggacagtatctctccaggaacagggttggagttataacctactgggcagtagctctccaggaacagggttggagttaaaacctactggacagtagctctccaggaacaaggttggagtttaaacctacaggatgttagctctccaggaacagggttggagttataacctactgGACAGTAACTCTCCAAAAACAGGGTTGTAATTTAAACCTACAGGATGTTAGCTCTCCCGGAACAGGGTTGGAATTTAAACCTACAGGATGTTAGCTCTCccggaacagggttggagtgctATTTGTCAATAGCAAATGAGGAAATCTGGTCACCGTTTGGCCATACAGAACTTGTGTGTTGTTAAAAGGAAGTAGGAGTCATTATTCATCGATGTGAATAACACACAGCAGTTCTGTTACTAAACTTTGTACCAATTCTGTTACACCACTTCCTCTCAACTCCCCTCGACTGTTTTACCTCATCATGTCCGCTACTCTTTACGGATCGACGGTCTAAACAAAACGGCGGTAACAACATGTGTATCTAGACTGAGACTGAGATTGAGATTGTTCTTCTCAAATGTAGCATCGTGAATAGCCCTGTTTATCTGGCCCTTATGGATCCATGTGAAACAACTTTGTTGTGTGGTTTCAAAAAAGGAGAAATGAAACACGTAAATAAATCCTGGGATGGAGACAGACAACAGGTTTTTACAGACAACACACTTGGCAGGGTTTGAGTTTGGAGGAATTTGATTGGAATTGAGAAAACAAGAGCACCTTGTAGAGCATAAgggtccaactcattccacggagggactagtgtctgcaggttttttggtttttcctttcaattaagaccttgACAACCCGGTGAGTGAAGctccttactaatcagtgaccttaattcaccaatcaagtacaagggaggagagaaaacccacagacactcagccctccgtggaatgTGTTTGACACCTGCAGTGTAGAATAACTAGAGTTTCCAGTCCAGGTCGTTGTTTCCGTGGTGACGGTCGGTGGCGAGTTGTCGCGGCGATGGTCGAATGGCAAGGCAAGAGAATAACATTTCACTTCTGCAGTGAAACACAGCTGCTTCCTGtacagggagagatacagacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagccccccttCCGTTTAAGTATACAGACCACTAGGTCTGCTTCTACATGGGAAAATGGCtgacatcatttaaaaaaatggaatTCCATTTTATTCATTTTTTGTTCCTGTGAGCTCAATGCGCAGTTTCCTTtaaagataaatcagatccagcctgaactgtgtgatgtagttgggagttgtagtttcctttaaagataaatcagatccagcctgaactgtgtgatgttgtagtttctctaaagataaatcagatccagcctgaactgtgtgatgtagtagggagttgtagtttcctttaaagataaatcagatccagcctgaactgtgtgatgtagtagggagttgtagtttcctttaaagataaatcagatccagcctgaactgtgtgatgtagtagggagttgtagtttcctttaaagataaatcagatccagcctgaactgtgtgatgtagtagggagttgtagtttcctttaaagataaatcagatccagcccgaactgtgtgatgtagtagggagttgtagtttcctttaaagataaatcagatccagcctgaactgtgtgatgtagtagggagttgtagtttcctttaaagataaatcagatccagcccgaactgtgtgatgtagtagggagttgtagtttcccttaaagataaatcagatccagcctgaactgtacgatgtagtagggagttgtagtttcctttaaagataaatcagatccagcccgaactgtgtgatgtagtagggagttgtagtttcctttaaagataaatcagatccagcctgaactgtgtgatgtagtagggagttgtagtttcccttaaagataaatcagatccagcctgaactgtgtgatgtagtagggagttgtagtttcccttaaagataaatcagatccagcccgAACTGTGTGATGTTGTAGTTTCTCtaaagataaatcagatccagcctgaactgtgtgatgtagtagggagttgtagtttctctaaagataaatcagatccagcctgaactgtgccatgtagtagggagttgtagtttccaacaggccaatattcgaCATAGGGTTAATCAATGGATTTGAAGGTGGTTTCTAGACAGGTTGGGACGAGGGTTAATCAATGGATATGAAGGTAGTTTCTAGACAGGTTGGGACGAGGGTTAATCAATGGATATGAAGGCGGTTTCTAGACAGGTTGGGACGAGGGTTAATCAATGGATATGAAGGTGGTTTCTAGACAGGTTGGGACGAGGGTTAATCAATGGATTTGAAGGTGGTTTCTAGACAGGTTGGGACGAGGGTTAATCAATGGATTTGAAGGTGGTTTCTAGACAGGTTGGGACGAGGGTTAATCAATGGATATGAAGGTGGTTTCTTGACAGGTTGGGACGAGGGTTAATCAATGAATATGAAGGTTGGGACGAGGGTTAATCAATGGATATGAAGGTGGTTTCTAGACAGGTTGGGACGAGGGTTAATCAATGGATATGAAGGTTGGGACGAGGGTTAATCAATAGATATGAAGGTGGTTTCTAGACAGGTTGGGACGAGGGTTAATCAATGGATATGAAGGTTGGGACGAGGGTTAATCAATAGATATGAAGGTGGTTTCTAGACAGGTTGGGACGAGGGTTAATCAATGGATTTGAAGGTGGTTTCTAGACAGGTTGGGACGAGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2087763 True 3469 lncRNA 0.43 2 3878206 3881717

Neighbor

gene id symbol gene type direction distance location
LOC118936586 pex13 coding downstream 47989 3821289 ~ 3830217 (-)
LOC118943842 LOC106577176 coding downstream 57504 3791031 ~ 3820702 (-)
LOC118936584 LOC106577178 coding downstream 185011 3685607 ~ 3693195 (-)
LOC118943921 LOC106600605 coding downstream 276347 3553536 ~ 3601859 (-)
LOC118943909 NA coding downstream 336886 3539615 ~ 3541320 (-)
LOC110531464 alb1 coding upstream 19185 3900902 ~ 3914858 (-)
LOC110532916 LOC106577328 coding upstream 43604 3925321 ~ 3937927 (-)
LOC110510589 papolg coding upstream 69073 3950790 ~ 3974808 (-)
LOC118943849 NA coding upstream 118218 3999935 ~ 4001461 (-)
LOC118943848 NA coding upstream 120985 4002702 ~ 4006322 (-)
G1823699 NA non-coding downstream 4228 3873475 ~ 3873978 (-)
G1823694 NA non-coding downstream 18385 3859573 ~ 3859821 (-)
G1823643 NA non-coding downstream 32347 3790052 ~ 3845859 (-)
G1823717 NA non-coding upstream 66721 3948438 ~ 3948665 (-)
G1823724 NA non-coding upstream 108924 3990641 ~ 3991228 (-)
G1823725 NA non-coding upstream 109587 3991304 ~ 3991819 (-)
G1823734 NA non-coding upstream 137091 4018808 ~ 4020441 (-)
G1823691 NA other downstream 31286 3844493 ~ 3846920 (-)
G1823530 NA other downstream 371934 3505577 ~ 3506272 (-)
LOC118943857 LOC106563104 other downstream 553417 3281355 ~ 3325024 (-)
G1823705 NA other upstream 22004 3903721 ~ 3906049 (-)
G1823710 NA other upstream 52176 3933893 ~ 3936043 (-)
G1824125 NA other upstream 779874 4661591 ~ 4662234 (-)
G1824416 NA other upstream 923747 4805464 ~ 4820448 (-)
G1824458 NA other upstream 1044696 4926413 ~ 4926815 (-)

Expression


Co-expression Network