XLOC_037497


Basic Information

Item Value
gene id XLOC_037497
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 55661068 ~ 55661584 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074946
ATGATGGAAAGATTTTTAAAGAATCCCGCTCCCGCAAGCAGTTCAAGCAAATCTGACTTGGCGAGGGTTAAGGCAAAAACCAGAAAATATAACAACTCTTACATTGCGCTTGGTTTTACCTGCATGTTAAAGCAGGGAGTCGATATACCTCAGTGTATTCTTTGTCAAGCGATTCTCTTCAATGAATGCATGAAACCATCCAAGCTCAAGCGCCATCTACAGCAGAAACATCCCAATGAGGCAGACAAATCGACAATTTCAAACAGCGGGAGCTGTGTTTGGCCTGGTAGGCTAGTATATTTCAGCAGCAAGCATTAATCCCTGTGAGgtgtttaaaatgttatatttggcATCACTCCACATGGCGCGTGCTAAGAAGCCGCACACAGTTGGCGTAGCATTGTTATTACCAGCTACCAAAGACATCGTCAAAGAGTTATTTGGAGAGGAAGCGGCACGAAAGGTAGATTGTGTGCCTTTGTCAGACAACACAGTAAGCAGACGCATACGTTCAATG

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0000313 organellar ribosome cellular_component
GO:0000315 organellar large ribosomal subunit cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008121 ubiquinol-cytochrome-c reductase activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors molecular_function
GO:0016681 oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074946 True 517 lncRNA 0.44 1 55661068 55661584

Neighbor

gene id symbol gene type direction distance location
XLOC_037496 NA coding upstream 41374 55615510 ~ 55619694 (+)
XLOC_037495 mxra5b coding upstream 106334 55455801 ~ 55554734 (+)
XLOC_037494 nlgn4xb coding upstream 242872 55321322 ~ 55418196 (+)
XLOC_037492 NA coding upstream 403426 55247358 ~ 55257642 (+)
XLOC_037493 CABZ01113123.1 coding upstream 412754 55248200 ~ 55248314 (+)
XLOC_037498 FP236644.1 coding downstream 4731 55666315 ~ 55698623 (+)
XLOC_037499 sept10 coding downstream 195609 55857193 ~ 55875077 (+)
XLOC_037500 NA coding downstream 219245 55880829 ~ 55887339 (+)
XLOC_037501 NA coding downstream 239135 55900719 ~ 55906990 (+)
XLOC_037502 NA coding downstream 241275 55902859 ~ 55904950 (+)
XLOC_037491 NA non-coding upstream 425055 55222482 ~ 55236013 (+)
XLOC_037483 NA non-coding upstream 1218561 54442087 ~ 54442507 (+)
XLOC_037503 CR352223.1 non-coding downstream 254829 55916413 ~ 55916544 (+)

Expression


Co-expression Network