G1825476


Basic Information

Item Value
gene id G1825476
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 6324097 ~ 6324496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2090382
tAAATCAGGCCCTGACTattaatatcaccccacctggtgtccctggtctaaatcaggccctgatcattaatatcacccacctggtgtcccaggtctaaatcgggccctgatcattaatatcaccccacctggtgtcccaggtctaaatcaggccctgatcattaatatcaccccacctggtgtcccaggtctaaatcaggccctgatcattaatatcaccccacctggtgtcccaggtctaaatcaggccctgatcattaatatcaccccacctggtgtcccaggtctaaatcagtccctgatcag
>TU2090383
tAAATCAGGCCCTGACTattaatatcaccccacctggtgtccctggtctaaatcaggccctgatcattaatatcaccccacctggtgtcccaggtctaaatcaggccctgatcattaatatcaccccacctggtgtcccaggtctaaatcaggccctgatcattaatatcaccccacctggtgtcccaggtctaagtcAGGCCCTGATCATCAATATCACCCATCTGCTGTcgcaggtctaaatcagtccctgatcag
>TU2090384
tAAATCAGGCCCTGACTattaatatcaccccacctggtgtcccaggtctaaatcgggccctgatcattaatatcaccccacctggtgtcccaggtctaaatcaggccctgatcattaatatcaccccacctggtgtcccaggtctaaatcaggccctgatcattaatatcaccccacctggtgtcccaggtctaaatcaggccctgatcattaatatcaccccacctggtgtcccaggtctaaatcagtccctgatcag

Function

NR:

description
proline-rich extensin-like protein EPR1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2090382 False 306 lncRNA 0.50 3 6324097 6324496
TU2090383 False 258 lncRNA 0.50 2 6324097 6324496
TU2090384 True 259 lncRNA 0.50 3 6324097 6324496

Neighbor

gene id symbol gene type direction distance location
LOC110514830 dock1 coding downstream 324951 5460328 ~ 5999146 (-)
LOC118943912 NA coding downstream 818620 5503698 ~ 5505477 (-)
LOC118943897 LOC106613906 coding downstream 898491 5423399 ~ 5425606 (-)
LOC118943918 NA coding downstream 973669 5340523 ~ 5350428 (-)
LOC118943892 LOC106592985 coding downstream 1002862 5172031 ~ 5321235 (-)
LOC110515214 bccip coding upstream 42525 6367021 ~ 6376535 (-)
LOC110510773 LOC106613841 coding upstream 421877 6746373 ~ 6813723 (-)
LOC110518105 LOC106592890 coding upstream 560858 6885354 ~ 6901189 (-)
LOC118943880 gpr26 coding upstream 1072663 7397159 ~ 7409361 (-)
LOC110531557 fbx37 coding upstream 1650423 7974919 ~ 7979808 (-)
G1825459 NA non-coding downstream 70820 6249562 ~ 6253277 (-)
G1825193 NA non-coding downstream 113460 6210386 ~ 6210637 (-)
G1825187 NA non-coding downstream 119079 6204754 ~ 6205018 (-)
G1825186 NA non-coding downstream 131161 6192695 ~ 6192936 (-)
G1825183 NA non-coding downstream 149332 6174528 ~ 6174765 (-)
G1825484 NA non-coding upstream 9285 6333781 ~ 6335182 (-)
G1825487 NA non-coding upstream 14063 6338559 ~ 6369676 (-)
G1825497 LOC106595211 non-coding upstream 37601 6362097 ~ 6365168 (-)
G1825500 NA non-coding upstream 45725 6370221 ~ 6372747 (-)
G1825502 NA non-coding upstream 56564 6381060 ~ 6381518 (-)
G1825145 NA other downstream 300135 6021536 ~ 6023962 (-)
G1824605 NA other downstream 984196 5338573 ~ 5339901 (-)
G1824563 NA other downstream 1076140 5247008 ~ 5247957 (-)
G1824561 NA other downstream 1087365 5236377 ~ 5236732 (-)
G1825493 LOC106593079 other upstream 27592 6352088 ~ 6354021 (-)
G1825582 NA other upstream 333622 6658118 ~ 6659951 (-)
G1825658 NA other upstream 498672 6823168 ~ 6825818 (-)
G1825645 LOC106593297 other upstream 602356 6926852 ~ 6943944 (-)
G1826079 NA other upstream 1260068 7584564 ~ 7584977 (-)

Expression


Co-expression Network