G1825407


Basic Information

Item Value
gene id G1825407
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 6897090 ~ 6897501 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2090280
GTAGTACTTCCTGTAAAGATCACACAGTGGACCTCAGGGTTAAAGTAGAGCTGTAGGTAACTTCCTGTAAAGATCACACAGTGGACCTCAGGGTTAAAGTTGAGGTCACTTCCTATAAAGATCACACAGTGGACCTCAGGGTTAAAGTAGAGCTGTAGGTAACTTCCTATAAAGATCACACAGTGGACCTCAGGGTTAAAGTAGAGCTGTAGGTAACTTCCTGTAAAGATCACACAGTGGACCTCAGGGTTAAAGTAGAGCTGTAGGTCACTTCCTATAAAGATCAcacaggtgagtgagtgag
>TU2090282
GTAGTACTTCCTGTAAAGATCACACAGTGGACCTCAGGGTTAAAGTAGAGCTGTAGGTAACTTCCTGTAAAGATCACACAGTGGACCTCAGGGTTAAAGTTGAGGTCACTTCCTATAAAGATCACACAGTGGACCTCAGGGTTAAAGTAGAGCTGTAGGTAACTTCCTGTAAAGATCACACAGTGGACCTCAGGGTTAAAGTAGAGCTGTAGGTCACTTCCTATAAAGATCACACAGTGGACCTCAGGGTTAAAGT
>TU2090283
GTAGTACTTCCTGTAAAGATCACACAGTGGACCTCAGGGTTAAAGTAGAGCTGTAGGTAACTTCCTGTAAAGATCACACAGTGGACCTCAGGGTTAAAGTTGAGGTCACTTCCTATAAAGATCACACAGTGGACCTCAGGGTTAAAGTAGAGCTGTAGGTCACTTCCTATAAAGATCACACAGTGGACCTCAGGGTTAAAGTAGAGCTGTAGGTAACTTCCTGTAAAGATCACACAGTGGACCTCAGGGTTAAAGTAGAGCTGTAGGTCACTTCCTATAAAGATCACACAGTGGACCTCAGGGTTAAAGT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106584434

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2090280 False 304 lncRNA 0.44 3 6897090 6897501
TU2090282 False 256 lncRNA 0.44 3 6897090 6897453
TU2090283 True 310 lncRNA 0.44 2 6897090 6897453
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Neighbor

gene id symbol gene type direction distance location
LOC110510774 fa53b coding upstream 33470 6833119 ~ 6863620 (+)
LOC110517872 LOC106560341 coding upstream 73315 6812803 ~ 6823775 (+)
LOC118943852 NA coding upstream 165197 6730524 ~ 6731893 (+)
LOC118943851 LOC104925227 coding upstream 166665 6659380 ~ 6730425 (+)
LOC110515887 mmp21 coding upstream 482741 6398501 ~ 6414349 (+)
LOC110516215 LOC106593297 coding downstream 10569 6908070 ~ 6943623 (+)
LOC110518744 LOC106592094 coding downstream 282588 7180089 ~ 7218167 (+)
LOC110514524 cpxm2 coding downstream 340496 7237997 ~ 7363219 (+)
LOC110510387 LOC105903359 coding downstream 883040 7780541 ~ 7857128 (+)
LOC110531553 LOC106577309 coding downstream 1082398 7979624 ~ 7982233 (+)
G1825401 NA non-coding upstream 8129 6888451 ~ 6888961 (+)
G1825399 LOC106577407 non-coding upstream 10978 6883963 ~ 6886112 (+)
G1825386 LOC100194703 non-coding upstream 28084 6868559 ~ 6869006 (+)
G1825387 NA non-coding upstream 53516 6842917 ~ 6843574 (+)
G1825417 NA non-coding downstream 9360 6906861 ~ 6907484 (+)
G1825420 NA non-coding downstream 26763 6924264 ~ 6924643 (+)
G1825410 NA non-coding downstream 47476 6944977 ~ 6945934 (+)
G1825430 NA non-coding downstream 82766 6980267 ~ 6980522 (+)
G1825431 NA non-coding downstream 83110 6980611 ~ 6980884 (+)
uros hem4 other upstream 502890 6376624 ~ 6394234 (+)
LOC118943860 LOC106577385 other upstream 819609 6005814 ~ 6077481 (+)
G1824861 NA other upstream 1012775 5883803 ~ 5884315 (+)
G1824784 NA other upstream 1176349 5720223 ~ 5720741 (+)
G1825869 NA other downstream 338953 7236454 ~ 7236902 (+)
G1826407 NA other downstream 1122860 8020361 ~ 8020914 (+)
G1826455 NA other downstream 1242080 8139581 ~ 8141676 (+)
LOC110515875 spock2 other downstream 1267922 8165316 ~ 8278334 (+)
LOC110513446 LOC106577352 other downstream 1612282 8508022 ~ 8654135 (+)

Expression

G1825407 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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G1825407 Expression in each Bioproject

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G1825407 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network