XLOC_037537 (si:dkey-11f4.16)


Basic Information

Item Value
gene id XLOC_037537
gene name si:dkey-11f4.16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 461143 ~ 470097 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073756
CAGCGAGGCTTGAAGTGATTATTCCAGTCTTAATAGTAATACTTTTCATTTTCCTCATAATACTGGCGATAATCATCTACATGAAGAAAAAGTCAAAGGAGTCTGAACAGGAGAAAATGGACCCTGAGAATGCTCTCAGTCAAACATCACTTTTGTCTCAAAATGAAAGGCCGGATGAGGAGAACAGATCAGACAGTCCAGGTGTAAATGAGGAAGAAAAACTTCTGAATCCCAGTGGAAATGAGGGAGAGCAGTGCAATTATGTGAACAGTCCGCATACATTTGTAGCAGTAGGAAATGCCAGCAGTCAACCTAATGTAACTCTGAACCGAAAACCCCTAGAAGACCAAGATAAAGTGAAGGATGGACAAAGAGAGAAACCGGAAGAACAAAAGACTGATAATGCTAAGAATAATGAGAAAAATGACAAAGTAGCAGGAAAGGAAAAGGAGAAGAAAAAGGAGCAACAAAACACAGcagatgcccttccagccgtaacccagccctgggaaacaaccatacacactcattcacaagctgaaaaaaattacaaactaccaggagagaaaaacaaagagaaaaacaaaGAGGAAAATGGGCAACCAAACACAGAATTACCTGAAAATACACACCAAGATTTAAACAGGCAAAAAACATCTCCAGCGCAGTCAGATCAGTGCCGTCAAAATCACGAAGAGGAAAAGAAGCCAGAAAAGAGGAATGAAAG
>TCONS_00073757
aaaagcatttttgctgTGTTCAGAGATTGACTCTGAGTCTGTTTTTAAGTGATTTGCTTTGTTTCAGCTCTCAGTCAAACATCACTTTTGTCTCAAAATGAAAGGCCGGATGAGGAGAACAGATCAGACAGTCCAGGTGTAAATGAGGAAGAAAAACTTCTGAATCCCAGTGGAAATGAGGGAGAGCAGTGCAATTATGTGAACAGTCCGCATACATTTGTAGCAGTAGGAAATGCCAGCAGTCAACCTAATGTAACTCTGAACCGAAAACCCCTAGAAGACCAAGATAAAGTGAAGGATGGACAAAGAGAGAAACCGGAAGAACAAAAGACTGATAATGCTAAGAATAATGAGAAAAATGACAAAGTAGCAGGAAAGGAAAAGGAGAAGAAAAAGGAGCAACAAAACACAGcagatgcccttccagccgtaacccagccctgggaaacaaccatacacactcattcacaagctgaaaaaaattacaaactaccaggagagaaaaacaaagagaaaaacaaaGAGGAAAATGGGCAACCAAACACAGAATTACCTGAAAATACACACCAAGATTTAAACAGGCAAA
>TCONS_00073758
CGCgactttaaaacaaaacaactttatcatttattctctttttttgttttctttgtcgaGATTTAAGCAGCAGATGAGTTTTACACTTCACACCGACATTAAATAACACGCGGTTAGAGGAGAAACTAACTAACAGCCAGGAGCTGAAATGGAGTTTGTGGTGCGGGTTTTGCTGTTCTTTACCTGCTTCTGTTTTCAAGattttgttttttgtgaGGACTATGCAGAAATGGGAGGCCGGATCACGTTTACTCCCAGCATTCGTGGAAAGCCTGTAGAAATCCTGTGGAAACACAATGGAGATAAGGTTGTGGAGTATGACAACAGGGAGACGGAGGAATTCGGATCATTCAAAGACCGGGTGGTGATTGATTTCGAAACAGGACAGCTCACAATAAAGAAACTGACCAGTCAAGACAGCGGACAATACCAGTCTGACATCACGATCAACGGGAAAGTCCAGAGCTCCAGACATACTTTAACTGTTCTGGATGTTCTTCCAGATCCTCGAGTGACCTGTGCAGTGAACAAGACCTCAAATCTTCAAGAGCTGTTGTGTTCAGTGGACTACAAGACTCAGCTGCAGTATAAGTGGAGCGGGCCGAATGTGATCGATCATCCGGGAGTAAAACTGACCATCAGCGAGCAGCAGAAAAACAGCGACTCCGTCTACTCCTGCACTGTGAAGAATGAAGTCAGCAGCAAAACAACAGACTTCAATCTGCAGCACTGCGTCACAGGAGCAGCAGCGAGGCTTGAAGTGATTATTCCAGTCTTAATAGTAATACTTTTCATTTTCCTCATAATACTGGCGATAATCATCTACATGAAGAAAAAGTTGTGCAAACGAGAAGCAAAGGAGTCTGAACAGGAGAAA
>TCONS_00073759
GGGACTCCGCCCATCCTCAAAAGTCACCTGATACTGCTGTTTTTTTCACTTTCGGTATTCGCgactttaaaacaaaacaactttatcatttattctctttttttgttttctttgtcgaGATTTAAGCAGCAGATGAGTTTTACACTTCACACCGACATTAAATAACACGCGGTTAGAGGAGAAACTAACTAACAGCCAGGAGCTGAAATGGAGTTTGTGGTGCGGGTTTTGCTGTTCTTTACCTGCTTCTGTTTTCAAGattttgttttttgtgaGGACTATGCAGAAATGGGAGGCCGGATCACGTTTACTCCCAGCATTCGTGGAAAGCCTGTAGAAATCCTGTGGAAACACAATGGAGATAAGGTTGTGGAGTATGACAACAGGGAGACGGAGGAATTCGGATCATTCAAAGACCGGGTGGTGATTGATTTCGAAACAGGACAGCTCACAATAAAGAAACTGACCAGTCAAGACAGCGGACAATACCAGTCTGACATCACGATCAACGGGAAAGTCCAGAGCTCCAGACATACTTTAACTGTTCTGGATGTTCTTCCAGATCCTCGAGTGACCTGTGCAGTGAACAAGACCTCAAATCTTCAAGAGCT

Function

symbol description
si:dkey-11f4.16 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in pronephric duct.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-357 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in pronephric duct.

Ensembl:

ensembl_id ENSDARG00000099799

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073756 False 727 mRNA 0.40 5 461143 464737
TCONS_00073757 False 586 lncRNA 0.40 3 461219 463221
TCONS_00073758 False 877 mRNA 0.44 5 464510 470038
TCONS_00073759 True 611 mRNA 0.43 3 467000 470097

Neighbor

gene id symbol gene type direction distance location
XLOC_037536 si:dkey-11f4.16 coding downstream 413 458751 ~ 460730 (-)
XLOC_037535 zgc:91849 coding downstream 4602 445471 ~ 456541 (-)
XLOC_037534 si:dkey-11f4.14 coding downstream 17692 440196 ~ 443451 (-)
XLOC_037533 NA coding downstream 23340 434375 ~ 437803 (-)
XLOC_037532 CR753874.2 coding downstream 46655 407678 ~ 414488 (-)
XLOC_037538 dip2a coding upstream 114843 584940 ~ 695000 (-)
XLOC_037539 cflarb coding upstream 231355 701452 ~ 704667 (-)
XLOC_037540 ndufb3 coding upstream 236989 707086 ~ 746317 (-)
XLOC_037541 NA coding upstream 287496 757593 ~ 758416 (-)
XLOC_037542 NA coding upstream 302766 772863 ~ 773656 (-)
XLOC_037520 NA non-coding downstream 211710 228667 ~ 249433 (-)
XLOC_037521 NA non-coding downstream 212158 243961 ~ 248985 (-)
XLOC_037519 NA non-coding downstream 244616 204557 ~ 216527 (-)
XLOC_037546 NA non-coding upstream 410651 880748 ~ 889567 (-)
XLOC_037549 CABZ01066922.1 non-coding upstream 533344 1003441 ~ 1003555 (-)
XLOC_037550 NA non-coding upstream 556918 1027015 ~ 1028650 (-)

Expression


Co-expression Network