G1826313


Basic Information

Item Value
gene id G1826313
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 7853947 ~ 7857162 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2091458
ACACTTTATTATTGAACCAGTGAGACTCCAGTGGACGAGAGGGCATAATACGGATGATCAGAGATGTACATATTATTTGACTGTATTTACAGAGTGAAAGTCAAGTGTTTTCACATTATACACAAATTATTCTACAAATAAATCAACAGTTTTGTAAATAACATAACATTAAATAAATTCAATCACCTTCCTATGGGTTTTTACAGCTAAATATGCATAATAATGACGACCGTTCTCTGCTCTGCATAGAATTGATACATGTACTTTCAGTAACGGACAATTTGCGTGTGTTTTCTCCCTATAATACTGCTCTCACAATGCAGACGTATGCAGGCTGTAAATAGACGAAACAAGAACAAGAACTAAAGTCTTTGGCAAATGTGGTAAAAAAATACATTCACTTGAAAGTTAAACGATGTAAGGTAATGTTTAATcacgtttttttccccccattctTCCAGCCAGGTCGGTGTTACCGGTGTGATTTTCAAGACAAACCAACTGGATAAGTCACTTGACGTCTTATACGACAAAacgaaaaaaacaaaacaaatataggAAGTTGAAACCTTgactaaaaaaaacaaaacaacaacaacctgcaTGTGATTAAAGGCATTTAACTGAAATCTTTGCCTTTTGCTTTTTAGTTGAAACGTATGTTTCCTTATGTGACGAAGGCCACATCAGAATGAAATGACTATACTAACGATACTATTTCTGCGtatcaaatggaaccctattccctacgtagtgcactacttctggtcaaaagtagtgcactatcaagggaatcgggtgccatgcAGGATGCAAGCAATAACCATTAAACTTGACTATTAATGATTGAATTAGTTAGTCAAAGGAAAAtagtttaatttaatttttaattaaaTTTAAATGAGCAAATGTTATGCTAATATCTTAATGCCAAAGACTTAGGTTCAAACTtaaaacgttagctagctaacttgtatGTGTGGATAGTAAGCGTACTAcgtaaggtagagagagacaaacTGGGGGAATTGCAGTGGTGTTACCAAAGCGACCTCCGGACATAATGCTACCGGGAAGTCAAGGAAACGGTCAACAGAAAGCAGCGACGTCTGAAGTGCCTCTCCGGACCGAAAAAGGTCACGATGAAGTCGTGATGATGTCGTGATGATGTCGCGATGATGTCGTGATGATGTCGCGATGATGTCATGGTTCTACGTTTCTTCTTCCTTTCTTCAACATAATAATATATTGTAAAACAAGACAAATAGGCATCCAGGTTCAAACGCCTGCATAATAGCGCTCCCAGTGTGTCAAACCTCCAGGTTCAAACGCCTGCATAATAGCGCTCCCAGTGTGTCAAACCTCCAGGTCAAAGTCTGCATAATAGCGCTCCCAGTGTGTCAAAACTCAAAAAATAGTGCaaaattaaaaacaaatacaaaatagaTTCTGCCTGATTATTTCTAGTATCCTGACAAATaaaaatgacaacaacaaaaagtcaAGCATATTATTTGCAATTCATTAAGATGTCAATAACAattataaaaacaaaataaaaaaatctttaAGAATATATTTACTAgggttttttttattattttttaaaaacttgtAAATTAGAAGACCACGGTATGTCACAATGTCCTTCTCATTTATCAATTCAGCGTTTTCTcgttttcttttcattttccctcCGTCTGATTGTGTATCACAGAGAACACCGCCTTATAATCTGCTCctggcatcatcatcatcaaaaaaAAAAAGCAACTGATTCATTTCATCATGCTTGAACGTTTGGTTGGTTACAAAaatgactgtacgtttgtttgtaaTAGAGGGGTGGAACCAGGCTGCGGCAGCCTTAGTCGCATCGACGCCAACGTCTTTAGCTTTTGATCTCATTGCACTGCCCGTAGAGTAGAAGGTTCAGACCGATGCAGAAGGAAGGGGAACAACAGCctgctactatactgtactggacACTCAGCTCAGGACGGGTTCCTCCGTCAGCCGACAGATCAGTCAAGTAAATGTCACGTTTTGATCCACGAAGGAGGAAAAAACAAACGGAGGACCATTACAAAAAAGGAAAAGATACAAATTCCTCCTTTTCATTTTCAAAACTTgtagttttttttgtttatttatttatttttgttttacctcaGTAACCTCAGTAGTATCACGTGTATATATAGTCTTTCAACGTCTCTAGTGGTAATGTACAGTCACGCAGATCAGAACGAAGAATTTTACATTTTTCACTACTTTGAAGGTCTCCAAATTCATGGTTGATGGGAAGTTGTCTGCATGGTATCCCGAACGATCAGGGATTTTTCTgttgtgtgtagtagtgtggtatcCAGGAGGACCGTTCTTCTTCTgttgtgtgtagtagtgtggtatcCAGGAGGACCGTTCTTCTTCTgttgtgtgtagtagtgtggtatcCAGCAGGACCGTTCTTCTTCTgttgtgtgtagtagtgtggtatcCAGGAGGACCGTTCTTCTTCTGTTGTGTGTAGTAGTGCGGTATCCAGGAGGACCCTTCTTCTTCTgttgtgtgtagtagtgtggtatcCAGGAGGACCGTTCTTCTTCTgttgtatgtagtagtgtggtatCCAGGAGGACCGTTCTTCTTCTgttgtgtgtagtagtgtggtatcCAGCAGGACCGTTCTTCTTCTGTTGTgtgtagtagtgtgatatacagGAAATGGAGCTGCCTGTTAGCTGTCTTAACGGTATCACCTCATGCCCTCTGTTCACACCGGGGCAACATGGACGCTGCCGAAGCCATGGTTGTAGTCATggtgtaggtggtggtggtggtggttgattTGGTTTCCATGGTAACTAGTGGCGGTCATATGCCGTGGCAGCAGTAGGTGGTCCGGAACCTCTGGATGTGGCACTATAATAATAAGGGGAAC
>TU2091459
ATGACAGGAAAGTAGTACCGTGCTCTACCATGACTTAGAAGAGTTTAGACACTTTATTATTGAACCAGTGAGACTCCAGTGGACGAGAGGGCATAATACGGATGATCAGAGATGTACATATTATTTGACTGTATTTACAGAGTGAAAGTCAAGTGTTTTCACATTATACACAAATTATTCTACAAATAAATCAACAGTTTTGTAAATAACATAACATTAAATAAATTCAATCACCTTCCTATGGGTTTTTACAGCTAAATATGCATAATAATGACGACCGTTCTCTGCTCTGCATAGAATTGATACATGTACTTTCAGTAACGGACAATTTGCGTGTGTTTTCTCCCTATAATACTGCTCTCACAATGCAGACGTATGCAGGCTGTAAATAGACGAAACAAGAACAAGAACTAAAGTCTTTGGCAAATGTGGTAAAAAAATACATTCACTTGAAAGTTAAACGATGTAAGGTAATGTTTAATcacgtttttttccccccattctTCCAGCCAGGTCGGTGTTACCGGTGTGATTTTCAAGACAAACCAACTGGATAAGTCACTTGACGTCTTATACGACAAAacgaaaaaaacaaaacaaatataggAAGTTGAAACCTTgactaaaaaaaacaaaacaacaacaacctgcaTGTGATTAAAGGCATTTAACTGAAATCTTTGCCTTTTGCTTTTTAGTTGAAACGTATGTTTCCTTATGTGACGAAGGCCACATCAGAATGAAATGACTATACTAACGATACTATTTCTGCGtatcaaatggaaccctattccctacgtagtgcactacttctggtcaaaagtagtgcactatcaagggaatcgggtgccatgcAGGATGCAAGCAATAACCATTAAACTTGACTATTAATGATTGAATTAGTTAGTCAAAGGAAAAtagtttaatttaatttttaattaaaTTTAAATGAGCAAATGTTATGCTAATATCTTAATGCCAAAGACTTAGGTTCAAACTtaaaacgttagctagctaacttgtatGTGTGGATAGTAAGCGTACTAcgtaaggtagagagagacaaacTGGGGGAATTGCAGTGGTGTTACCAAAGCGACCTCCGGACATAATGCTACCGGGAAGTCAAGGAAACGGTCAACAGAAAGCAGCGACGTCTGAAGTGCCTCTCCGGACCGAAAAAGGTCACGATGAAGTCGTGATGATGTCGTGATGATGTCGCGATGATGTCGTGATGATGTCGCGATGATGTCATGGTTCTACGTTTCTTCTTCCTTTCTTCAACATAATAATATATTGTAAAACAAGACAAATAGGCATCCAGGTTTCAAACGCCTGCATAATAGCGCTCCCAGTGTGTCAAAACTCAAAAAATAGTGCaaaattaaaaacaaatacaaaatagaTTCTGCCTGATTATTTCTAGTATCCTGACAAATaaaaatgacaacaacaaaaagtcaAGCATATTATTTGCAATTCATTAAGATGTCAATAACAattataaaaacaaaataaaaaaatctttaAGAATATATTTACTAgggttttttttattattttttaaaaacttgtAAATTAGAAGACCACGGTATGTCACAATGTCCTTCTCATTTATCAATTCAGCGTTTTCTcgttttcttttcattttccctcCGTCTGATTGTGTATCACAGAGAACACCGCCTTATAATCTGCTCctggcatcatcatcatcaaaaaaAAAAAGCAACTGATTCATTTCATCATGCTTGAACGTTTGGTTGGTTACAAAaatgactgtacgtttgtttgtaaTAGAGGGGTGGAACCAGGCTGCGGCAGCCTTAGTCGCATCGACGCCAACGTCTTTAGCTTTTGATCTCATTGCACTGCCCGTAGAGTAGAAGGTTCAGACCGATGCAGAAGGAAGGGGAACAACAGCctgctactatactgtactggacACTCAGCTCAGGACGGGTTCCTCCGTCAGCCGACAGATCAGTCAAGTAAATGTCACGTTTTGATCCACGAAGGAGGAAAAAACAAACGGAGGACCATTACAAAAAAGGAAAAGATACAAATTCCTCCTTTTCATTTTCAAAACTTgtagttttttttgtttatttatttatttttgttttacctcaGTAACCTCAGTAGTATCACGTGTATATATAGTCTTTCAACGTCTCTAGTGGTAATGTACAGTCACGCAGATCAGAACGAAGAATTTTACATTTTTCACTACTTTGAAGGTCTCCAAATTCATGGTTGATGGGAAGTTGTCTGCATGGTATCCCGAACGATCAGGGATTTTTCTgttgtgtgtagtagtgtggtatcCAGGAGGACCGTTCTTCTTCTgttgtgtgtagtagtgtggtatcCAGGAGGACCGTTCTTCTTCTgttgtgtgtagtagtgtggtatcCAGCAGGACCGTTCTTCTTCTgttgtgtgtagtagtgtggtatcCAGGAGGACCCTTCTTCTTCTgttgtgtgtagtagtgtggtatcCAGGAGGACCGTTCTTCTTCTgttgtatgtagtagtgtggtatCCAGGAGGACCGTTCTTCTTCTgttgtgtgtagtagtgtggtatcCAGCAGGACCGTTCTTCTTCTGTTGTgtgtagtagtgtgatatacagGAAATGGAGCTGCCTGTTAGCTGTCTTAACGGTATCACCTCATGCCCTCTGTTCACACCGGGGCAACATGGACGCTGCCGAAGCCATGGTTGTAGTCATggtgtaggtggtggtggtggtggttgattTGGTTTCCATGGTAACTAGTGGCGGTCATATGCCGTGGCAGCAGTAGGTGGTCCGGAACCTCTGGATGTGGCACTATAATAATAAGGGGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2091458 False 2944 lncRNA 0.40 3 7853947 7857114
TU2091459 True 2859 lncRNA 0.39 3 7853947 7857162

Neighbor

gene id symbol gene type direction distance location
LOC118943880 gpr26 coding downstream 444586 7397159 ~ 7409361 (-)
LOC110518105 LOC106592890 coding downstream 952758 6885354 ~ 6901189 (-)
LOC110510773 LOC106613841 coding downstream 1040224 6746373 ~ 6813723 (-)
LOC110515214 bccip coding downstream 1477412 6367021 ~ 6376535 (-)
LOC118943912 NA coding downstream 2348470 5503698 ~ 5505477 (-)
LOC110531557 fbx37 coding upstream 117757 7974919 ~ 7979808 (-)
LOC110531799 LOC106577395 coding upstream 224592 8081754 ~ 8089912 (-)
cj104 cj104 coding upstream 242146 8099308 ~ 8104167 (-)
LOC110515025 LOC106577347 coding upstream 425985 8276732 ~ 8289116 (-)
LOC118943919 LOC106560865 coding upstream 433308 8290470 ~ 8303415 (-)
G1826203 NA non-coding downstream 94781 7758781 ~ 7759166 (-)
G1826202 NA non-coding downstream 95217 7758309 ~ 7758730 (-)
G1826197 NA non-coding downstream 100956 7752782 ~ 7752991 (-)
G1826196 NA non-coding downstream 102589 7749274 ~ 7751358 (-)
G1826171 NA non-coding downstream 160208 7693430 ~ 7693739 (-)
G1826319 NA non-coding upstream 11306 7868468 ~ 7869561 (-)
G1826340 NA non-coding upstream 56865 7914027 ~ 7914404 (-)
G1826360 NA non-coding upstream 90713 7947875 ~ 7948162 (-)
G1826372 NA non-coding upstream 106202 7963364 ~ 7963603 (-)
G1826374 NA non-coding upstream 107468 7964630 ~ 7964858 (-)
G1826079 NA other downstream 268970 7584564 ~ 7584977 (-)
G1825645 LOC106593297 other downstream 926603 6926852 ~ 6943944 (-)
G1825658 NA other downstream 1028129 6823168 ~ 6825818 (-)
G1825582 NA other downstream 1193996 6658118 ~ 6659951 (-)
G1825493 LOC106593079 other downstream 1499926 6352088 ~ 6354021 (-)
G1826369 NA other upstream 102677 7959839 ~ 7960824 (-)
G1826594 NA other upstream 286021 8143183 ~ 8147004 (-)
G1827228 NA other upstream 985440 8842602 ~ 8948639 (-)
LOC110532987 LOC106596646 other upstream 993771 8838876 ~ 8945963 (-)
jakmip3 LOC106577179 other upstream 1255395 9049200 ~ 9133856 (-)

Expression


Co-expression Network