XLOC_037544 (marco)


Basic Information

Item Value
gene id XLOC_037544
gene name marco
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 795609 ~ 813693 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073768
GACTGTCAAAAGCGTTTGATTCCTCCACCTGCAGATTTGTTCCTTATTCTTGGGAAGGCCTTCCTCTTGTCAGATGACCGATGTTTTGATGAGCCAGCGTATACTTTTCCCGTTTTCTGCGGTTGTGTTTTTAAGAGCCGCTCCTGGTTGTGTACTGGTCAGTGTGCATGCTGGACTGACCGATGGAGACAGAAGTGGACGATTTCCCAGGGAAGGCTTCGATATTCAGCCAGGTCAACCCTCTGTATAGCAACAACATGAAGCTCTGTGAGGCCGAGCGATACGACTTCCAGCACAGCGagCCCAAAACTATGAAATCAGCGAGCAAACGTCACTGTGTTCCTGTCCTCATTCTGCTTTTCCTGCTGCTGATTGGACTCAATTCATTTCTGGCTTATAAAGTCTTTACACTGGAGGCTTGGGTTCACACACACTGTACATCAGCTCAAAACCATGAACTCACGTCTGCTTCCAGCTTCCAGTTGGGCAGCTCCAAAAACGAAGTGgAATGCTTTACTGATCTATGTGGAACTGATGGAACATTAGAACACCTTAGGACTCAAATTAACCAACTCAATGCTACTGCAGAAAAAGcCATCGTTTGCCCGCCTGGACCACCTGGACCACCAGGTTCTAATGGAATTCCAGGGTTCCCGGGACAGAAAGGAATTCCAGGCTCACCAGGTAGGGTGGGAGAACCTGGAGCTCCGGGTCAAAAAGGACAGACAGGAGATCCTGGTATAAAAGGGGAAAGAGGGATGGTTGGCTTCCCGGGTATACCTGGTGCTCCTGGGAGGAAGGGAGATTCAGGAGAGAGAGGATTACAAGGTTTACCAGGCAATGATGGTAGTCCAGGTCAAGATGGCAGGACTGGTCCTCAGGGGATGCCAGGGCCCAGTGGAAGCCAAGGGGTAAAAGGAGACCCGGGTCTCAAAGGTGAGCGTGGAGACCAGGGACCACCAGGTCCTACAGGGCCTCAAGGTTCATCGGGGGCTCGCGGATTGCAAGGAATACCTGGAGAAAAAGGCTCACCTGGACCTAAGGGAGACACTGGAGTTGGCCTTCAAGGACCCACAGGACAACAGGGGCAAAAGGGAAGTCAAGGAGTGCCAGGTGTCCCAGGAGCTCGAGGTGCGAATGGAGAAAAGGGTGATCGAGGTCTATCAGGGCAAAAGGGAGATCAAGGTCCAAAGGGGGAGAAAGGTGATGCAGGAGCCAAGGGTGCGAGTGGGGGATCGCAAGTGGTCCGTCTCGTGGGAAGCTCCACCCGTGGAAGAGTGGAGGTGTTTTATCAGAACGTCTGGGGGACGGTGTGTGACGACAGCTTCGATAATTTGGATGCGCTGGTGGTGTGTAGAATGCTGGGCTTCCAGAGATCCACACAGGTCTACACTGACGGTTCAGGATCTGGACGCATCTGGCTGGATGAGTTGAGATGCACTGGAACCGAGAGCAGTATTTTTAACTGTCCACATGCAGGAATGGGAATCAACAACTGTGGCCACGGCGAGGATGTGGGAGTtagctgtgcatgaaaataatgAACTATTGATGGATTTCAGTCAACCAATATTTCACTGATGTTTGTCAGTTCTCCATGCACAGATGTAGATCATGGGATGACCATATGTCTCCAGTGTTCAGATGTGTTGGAGCAAAACATCTTTTGTCAGATGCTATGCTTGTGATGTGGAAAATAtgcaattttaaatgtattaaaattacatttttgggccTGTGGACATTATGAATGTATGAGCACCACAACAAATTACTCTAATATTAAACTATAACACTGTTCTGACTaatgcttaaatgtgtacacacagcaaaataaacaGGCAAATATTTTTAGGTCTTTTGTTGATTTCTGTACACCCAACATTCTGTCACATTTCTCCCATTGTCCTTTTTTAAAAGGGC
>TCONS_00073769
ATGGAGACAGAAGTGGACGATTTCCCAGGGAAGGCTTCGATATTCAGCCAGGTCAACCCTCTGTATAGCAACAACATGAAGCTCTGTGAGGCCGAGCGATACGACTTCCAGCACAGCGagCCCAAAACTATGAAATCAGCGAGCAAACGTCACTGTGTTCCTGTCCTCATTCTGCTTTTCCTGCTGCTGATTGGACTCAATTCATTTCTGGCTTATAAAGTCTTTACACTGGAGGCTTGGGTTCACACACACTGTACATCAGCTCAAAACCATGAACTCACGTCTGCTTCCAGCTTCCAGTTGGGCAGCTCCAAAAACGAAGTGgAATGCTTTACTGATCTATGTGGAACTGATGGAACATTAGAACACCTTAGGACTCAAATTAACCAACTCAATGCTACTGCAGAAAAAGcCATCGTTTGCCCGCCTGGACCACCTGGACCACCAGGTTCTAATGGAATTCCAGGGTTCCCGGGACAGAAAGGAATTCCAGGCTCACCAGGTAGGGTGGGAGAACCTGGAGCTCCGGGTCAAAAAGGACAGACAGGAGATCCTGGTATAAAAGGGGAAAGAGGGATGGTTGGCTTCCCGGGTATACCTGGTGCTCCTGGGAGGAAGGGAGATTCAGGAGAGAGAGGATTACAAGGTTTACCAGGCAATGATGGTAGTCCAGGTCAAGATGGCAGGACTGGTCCTCAGGGGATGCCAGGGCCCAGTGGAAGCCAAGGGGTAAAAGGAGACCCGGGTCTCAAAGGTGAGCGTGGAGACCAGGGACCACCAGGTCCTACAGGACCTCAAGGTTCATCGGGGGCTCGCGGATTGCAAGGAATACCTGGAGGAAAAGGCTCACCTGGACCAAAGGGAGACACTGGAGTTGGCCTTCGAGGACTCACAGGACAACAGGGGCAAAAGGGAAGTCAAGGCTTGCCAGGTGTCCCAGGAGCTCGAGGTGCGAATGGAGAAAAGGGTGATCGAGGTCTATCAGGGCAAAAGGGAGATCAAGGTCCAAAGGGGGAGAAAGGTGATGCAGGAGCCAAGGGTGCGAGTGGGGGATCGCAAGTGGTCCGTCTCGTGGGAAGCTCCACCCGTGGAAGAGTGGAGGTGTTTTATCAGAACGTCTGGGGGACGGTGTGTGACGACAGCTTCGATAATTTGGATGCGCTGGTGGTGTGTAGAATGCTGGGCTTCCAGAGATCCACACAGGTCTACACTGACGGTTCAGGATCTGGACGCATCTGGCTGGATGAGTTGAGATGCACTGGAACCGAGAGCAGTATTTTTAACTGTCCACATGCAGGAATGGGAATCAACAACTGTGGCCACGGCGAGGATGTGGGAGTtagctgtgcatgaaaataatgAACTATTGATGGATTTCAGTCAACCAATATTTCACTGATGTTTGTCAGTTCTCCATGCACAGATGTAGATCATGGGATGACCATATGTCTCCAGTGTTCAGATGTGTTGGAGCAAAACATCTTTTGTCAGATGCTATGCTTGTGATGTGGAAAATAtgcaattttaaatgtattaaaattacatttttgggccTGTGGACATTATGAATGTATGAGCACCACAACAAATTACTCTAATATTAAACTATAACACTGTTCTGACTaatgcttaaa

Function

symbol description
marco Predicted to be an extracellular matrix structural constituent. Acts upstream of or within defense response to bacterium and phagocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in pulmonary tuberculosis. Orthologous to human MARCO (macrophage receptor with collagenous structure).

GO:

id name namespace
GO:0006909 phagocytosis biological_process
GO:0042742 defense response to bacterium biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG:

id description
ko04145 Phagosome
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-120514-2 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within defense response to bacterium and phagocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in pulmonary tuberculosis. Orthologous to human MARCO (macrophage receptor with collagenous structure).

Ensembl:

ensembl_id ENSDARG00000059294

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073768 False 1923 mRNA 0.49 17 795609 813693
TCONS_00073769 True 1634 mRNA 0.50 17 795716 813511

Neighbor

gene id symbol gene type direction distance location
XLOC_037543 en1a coding downstream 10165 778745 ~ 785444 (-)
XLOC_037542 NA coding downstream 21953 772863 ~ 773656 (-)
XLOC_037541 NA coding downstream 37193 757593 ~ 758416 (-)
XLOC_037540 ndufb3 coding downstream 49292 707086 ~ 746317 (-)
XLOC_037539 cflarb coding downstream 90942 701452 ~ 704667 (-)
XLOC_037545 c1ql2 coding upstream 30528 844221 ~ 849069 (-)
XLOC_037546 NA coding upstream 67055 880748 ~ 889567 (-)
XLOC_037547 C9H2orf76 coding upstream 86699 900392 ~ 904227 (-)
XLOC_037548 sctr coding upstream 112276 925969 ~ 950004 (-)
XLOC_037549 CABZ01066922.1 coding upstream 189748 1003441 ~ 1003555 (-)
XLOC_037533 NA non-coding downstream 357806 434375 ~ 437803 (-)
XLOC_037532 CR753874.2 non-coding downstream 381121 407678 ~ 414488 (-)
XLOC_037521 NA non-coding downstream 546624 243961 ~ 248985 (-)
XLOC_037550 NA non-coding upstream 213322 1027015 ~ 1028650 (-)
XLOC_037551 NA non-coding upstream 364208 1177901 ~ 1181454 (-)
XLOC_037554 NA non-coding upstream 489244 1302937 ~ 1305423 (-)

Expression


Co-expression Network