XLOC_037554


Basic Information

Item Value
gene id XLOC_037554
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1302937 ~ 1305423 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075257
TGTTGATTTTATTGATTATGTTGATGAGTTACTCTTGAGTAACAGCAGCAGGTAAACAGAGGAACATGTATGCTAACGAACAGTGCTGATGACAGAGAGAACATAGAAAAGGCAAGTGTCTGAAATTGAACCTGAAGCCTCAGATGTGAAACAGTTTACTGGATTCAGCAAAACGACTCCATCTTTTTAACAAAAGCAGATACATTCATTCCTTTTTAATAAAGGATCATAAGCAACAGAGATATTGTTTTCCTGATATGTGAAGCTCAGCGTATCTATTATATCATGGCTAAAATCTGGGTATATCAACTGTGTGGTGTTGTTTCCGTTCACTTTGTGCAACAAATAGTTTTGCATAGTAAATGAAAGTTTTGTAGcagacatgcacagacacacagcacagtCTCTGTAACATACAGCTTTTCCTATACAGGGCTGGGCATTCATACTTCATACTTACAGATTAATAAGCCCACTACAGTGAATTCATGCAGCAAAGCAGTCACGTCCAGACCCGATGGACCAGAAAATCCATATAGTTCGGCGTGAATAATACGTCTTCGTAATCTGACCAACAGATTGGGTGTGCATTTACAAGGAATTTAAATAGATGGAAAAGCTATATTTAAAGAACCACCCTGCTGAAAACACTGCATATGCTGGTAAGGTGtgttttgatgctggtatgcTGACTTTGTTGGGTCTCAATGTTGGTCTTGCTGGTCTTGATGGTCTCAATGGTGGTCTTgttggtttcaatgctggtcttgcagGTTTCAATGCTCGTCTCAATGGTGGTCTTGCTGGACAAGCTTGAGATCATCATTGAAACCAGCATTAAAACTAGCAAGACCAGCAtagaaaccagcaagaccagctttaagaccagcattgagaccagcattgaaaccagcaggATCAGCTttaagaccagcattgagaccagcatggAAACCAGCAAGAGCACAATttagaccagcaagaccagcttTTAAACCAGCAAGTCAAATATtgaaaccagcattgaaaccaacAAGACcaacattgaaaccagcaagaccaccAAGACCTGCATtgaaaccagcattgaaaccagcaaaaccatcattgaaaccagcaagaccatcTTTTAGACCAATAAATCAAGTATTGAGACCAgcactgaaaccagcaagaccagcattgagaccatcattgaaaccagcaagaccagttTGAGACCAGCAAGtccagcattaaaaccagcaaaaCCATCACTGAAACCAGTAAAACCAGCATTGAATCCAGCTATACCTATTCTGAAACCAGCTAGTCCAGCAATGAAACCAGCAAAACCCCTACTGAAACCAGTTAGTCCAGCATTGAatccagcattgaaaccagcaagaccagcattaaaCCAAACCTTCCCAGCTTATGCAGTTCTTTCAGCAGGGCAGGGTTATTGCATGTATTTCATATGATCAGTTACTCTATACTACCTCGATCTCCCCCAGCAAGGGAAACAACATCTCAGTAAAGTGCTGTGTTTGAATCCTCCAGAAGCGTACAATTTTAATCATAGATCTTTGGCTTTGAGTCACCTCCTCATTAAAAGTGGACGGTGACGTACAGCATCAATACATGTGTTCACTTACGGCCAGCTGCACAGCCCTATATCAGAGAGAAACACTGACTGACAGATAGCAGAATACACAGATAAACATACAGAAATAGATCAGATCAGTcatgaacaacaacaaaaagaaagaataaaaaaaaaaaaactaaacactctTTATAAATCAACCATTAAAACATTGGCACAATGAGGAAAATCATATTACAATtcagctttaaagggatagttccccccAAAAATGACAGTTCTGTCATCATGTACTCATTCAAAGCTTGAACacaaacagaagatattttgaaacatgctgaaaacctgtaaccattgacttctatagtattt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075257 True 1960 lncRNA 0.40 2 1302937 1305423

Neighbor

gene id symbol gene type direction distance location
XLOC_037553 gpr1 coding downstream 66089 1235778 ~ 1236848 (-)
XLOC_037552 ino80da coding downstream 102750 1187805 ~ 1200187 (-)
XLOC_037551 NA coding downstream 121483 1177901 ~ 1181454 (-)
XLOC_037550 NA coding downstream 274287 1027015 ~ 1028650 (-)
XLOC_037549 CABZ01066922.1 coding downstream 299382 1003441 ~ 1003555 (-)
XLOC_037555 FP102120.4 coding upstream 73953 1379376 ~ 1379490 (-)
XLOC_037556 osbpl6 coding upstream 86112 1391535 ~ 1459985 (-)
XLOC_037557 rbm45 coding upstream 157629 1463052 ~ 1484202 (-)
XLOC_037558 NA coding upstream 158346 1463769 ~ 1780381 (-)
XLOC_037559 si:ch211-222f23.6 coding upstream 179811 1485234 ~ 1499721 (-)
XLOC_037546 NA non-coding downstream 413370 880748 ~ 889567 (-)
XLOC_037542 NA non-coding downstream 529281 772863 ~ 773656 (-)
XLOC_037561 CU104777.1 non-coding upstream 337182 1642605 ~ 1649744 (-)
XLOC_037563 CR848724.1 non-coding upstream 443496 1748919 ~ 1749036 (-)
XLOC_037564 NA non-coding upstream 626005 1931428 ~ 1936169 (-)

Expression


Co-expression Network