XLOC_037559 (si:ch211-222f23.6)


Basic Information

Item Value
gene id XLOC_037559
gene name si:ch211-222f23.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1485234 ~ 1499721 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073783
CTGACGTAATTTCAGTATAGTGTTGGGCACGGTTTAATTAGTTAAAGGCTGTTTAGCATTCAGTCACATTACACAGAGATAGCACAGCTGATAAGTTTGAACAGCTGAAGTTATCATGCATCTGCTCGAGGAAAGAAAAGCTTTTACCCTGTTCCTCTGTTTTCTCAAGTGCATCAGCACAGCCGGCGTCAAGAATTCTGTTCATAACAAAGCAGTCATGATAGGAGAGGATGCCACATTGTTTTGTGATCTGACTGCGACGCAAGAGAATACAAGTCGTGTTGTTTGGCAGAAACAGACAAGCGAAAACCACCAACCAGAGACTTTCTTTATCATTCACAAAGACGGTCGAACTGAACACCGTGATTTACAGGATCATGTTAGATTTGTTGGGAACCTCATGGAGAATAATGGATCGATTCAGCTAATGGGATTGAAGCTCGTGGATGATGGAATTTACACGTGCATTTTCACCATTAATGAGCAACAAGCCCAGAAAGTCATCAGCGTGACGGTACTTGTTCCTCCTGTGGGTAGTGTGATGGGGAGTACTCATGTTTCCGGAGCTTTCAGTGTTGATCTGGCTTCATGTATGGCTTCAGGAGCCCGGCCGGCAGCTCGAGTGTTTTGGAGATTAGGAGCCCTGAACACCTCACTGAACACACATACCAGCTCCACGGAGCACTCAGACGGCACCTTCACAGTCCAGTCCCACATATATGGTGTGCCATCCAAACATTTACACCAGAAGAAGATCCAGTGTGTGGTCCAGCACATCACATTCACAGAGGACCTGGAGTTAGAGTACCAGATCAATGTCCACTATCCTCCAGATCTGGTGATTATCAGTCCTGATGATCCAAATAACCCAGCAGAGGCTGAAGAATATCATTGTGAAGTGGACTGTAACCCAACACCAACTTACATCTGGAAGCGAATGAATGAAAGTGAGGGAAGAGCTCCTCGTTATGAAGGCAACAAGCTTTTCTTGCCAAAATCCTCAGTTGATTTGAATGGTGTTTACATCTGTACAGCATCAAACCAGTATGGAAGTGCTTCAGGAAGTGTCCTCCATGTCAATCTCACCGGATGCAGTGTTTTCCGCTGGTGTATTCTCGGTGTCATCTTCATTGTTGTCCTCTGCTCTTCTGTGGTCCTCAAATATTCAAGTGGTAGAAAAACTTGTGGTGTGCTTATTAAGAAACAGGGGCGGACTTAGACACAATTTCAGGCCAGACAATTCCACACCCACCCAGATAATCTTTTGAGAAATGAACAGTGGGCGTCTATTGAGAAACGAATAACTGGCCAAATGTTTGGCAAATGTAAGAGTATAAAGAATAAGACTCTTCACGGTATGTCCATTATTTCCTAATCTACTCTGTCTTTGCTGAAGAAGACGtcagtgtttatcatgttttctATGTACTTTTGTTTGTACCACGTGATTCCTTTGGTCAGTTTTCCCGCTTTTTacaatatttgtgtttttattagttcCACCATTTATTAGTTTTACCTATTTGTATTTGAGTTCATAATGTCCTGTGTATTTATACACGTGAGTACCGGTCTTATATTCTTATATATCTGTGTTCCCagttaagtgtttttttaaaagggaaaaaagtgtttgtgtgaatatgagagtgtgtatgggtgtttcccagtactgggttacacctagaagggcatccgctgcgtaaaacatatgctgaaattacaaaccacaggagagggacaattctccagcaggatagcgctccttctcatacttcagcctccacatcaaagctcctcaAAGCAGAGAAGGtgaagctgctccaggattggccagcccagtcaccagacatgaacattattgagcatgtctggggtaagatgaagaagtaggaatcattgaagatgaatccaatgaaaaactctgggagtcctgcatgaaggctttcttcttcattccagatgactttattaatcagtgatttgagtcatgtcagagatgtatggatgcagtcctccaagctcatgatggagtcagacacaatattcattctgtctccactgcagcaggactttatattctatactggacattatttctgttcagtgatgagactttagtctaagcagagtcagacgtTACTGTACTaaagaaatcattaataatcaaggcatgatcagattttattgtgctcaaataagcaaaatctagaggcctttacctttcatataagacattt

Function

symbol description
si:ch211-222f23.6 Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction.

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005912 adherens junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-208 Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction.

Ensembl:

ensembl_id ENSDARG00000042880

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073783 True 2240 mRNA 0.42 6 1485234 1499721

Neighbor

gene id symbol gene type direction distance location
XLOC_037557 rbm45 coding downstream 1032 1463052 ~ 1484202 (-)
XLOC_037556 osbpl6 coding downstream 25249 1391535 ~ 1459985 (-)
XLOC_037555 FP102120.4 coding downstream 105744 1379376 ~ 1379490 (-)
XLOC_037554 NA coding downstream 179811 1302937 ~ 1305423 (-)
XLOC_037553 gpr1 coding downstream 248386 1235778 ~ 1236848 (-)
XLOC_037560 agps coding upstream 89951 1589672 ~ 1639965 (-)
XLOC_037561 CU104777.1 coding upstream 142884 1642605 ~ 1649744 (-)
XLOC_037562 hnrnpa3 coding upstream 193205 1692926 ~ 1703801 (-)
XLOC_037563 CR848724.1 coding upstream 249198 1748919 ~ 1749036 (-)
XLOC_037564 NA coding upstream 431707 1931428 ~ 1936169 (-)
XLOC_037551 NA non-coding downstream 303780 1177901 ~ 1181454 (-)
XLOC_037550 NA non-coding downstream 456584 1027015 ~ 1028650 (-)
XLOC_037549 CABZ01066922.1 non-coding downstream 481679 1003441 ~ 1003555 (-)
XLOC_037566 dre-mir-10b-1 non-coding upstream 453235 1952956 ~ 1955923 (-)
XLOC_037572 NA non-coding upstream 651201 2150922 ~ 2173197 (-)

Expression


Co-expression Network