XLOC_037561 (CU104777.1)


Basic Information

Item Value
gene id XLOC_037561
gene name CU104777.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1642605 ~ 1649744 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073787
GTGTGTTCAGTTTTTGACTAGGAGAACAGTGAAGTGCACTCCGTTTTTTTCTCTCCCCCCGTCCTAAGCGCGTGCGTGATTGCGCGCGCACGGTTGGCAGCTCCACGTCGACATTCTCCAGCTGAAGCTCTTCATCCACAGCTTGCAGGATCTCCAGTGTTCAGCAGCTCCAGACAGAGAAACAAGCAGACCCAGAGCTTCTCCAGGAACCCACAGACCGACTGAATGACCGAGAGCTGCAGCAGATGGCGGAAGAGTGCGAATATCATCAAGCAGCTCTCTGGCTTTCCAAGTAAAGTTCTGTGATACACTCCGACTCTGAATGTTTGCAGTCAGTGCATTACAGAACTTTGTTTTGGGAGTTTAAAGCTCAGGCCTGGAGGAGAAAAGCATGAAAACGACGTCGTGTTCCTcgacaacacacacaaaacatcatTACAATTACCACCATCTCATGCTCGTTCCCTTACCTTCAACTGCTATCCCCAAAAttcaatgtgtttgtgtgtgttatgtaCGTGATCTGTTTTCAGAGTGTGTTTTCCAAGCACTCAATTAGCATAGCGAAGGCTATACCACAATTGCTAAACGGCTAAAAATAAGCGTTGCGCAGTAACACAGCTCTTTCCAATTAAACATTCCTTTCCGAAACctcactcaacacagaaatgcggCATTTTTTCCCATTGTTGTAAAAAGGAATGCATTTCACATGTAGAAGAAGGGAAAGTGTGTGAAATGGGTTTAGGTTTGTGATGACATCATCAGGAGGCGGTCACATGACTCTGAAGAGCACAGGTAACACTCTGATATACAGCGGGgagaataagtattgaacacgttgTCGTGTTTTTTCCTGGGAGTTATATTTGTGAAGGGaatggaattgaagcagattttgatttaaaaacccgaacaatacaaacataaaaataaaattaaacacgtTTATTAAGTTACGTTTAATAACAGTGGAAAGACAGGAGGAggaagtgctgaactactgaagtGTACTTAATTGGTGCTGGATGCCTCTCATATGAATAAAGAAGTCCCATGTCTTGCTCAGGTgcttctcacagacttcaacagagtttCAAACTCTTgatagttctgtgggtctcgtctatcaaatctgagctttatctgaattctctattggattcgagtcaggGGATTgtttgggccattctacagcttgattctCTTTCACTGAAAGCATccgagagtctccttggctgtgttttggatcattgtcttgctgaaatgtccaccctgggttcatcttcatcctcctgctgatgtagatgttggactgaagcagctgatgttcatttacactgaggaagggcagaggcttgctgaagaactactgagagatttcagctgctgtctgggctttcactgctgaaCTACGCCTCCCTTTCTTCGTgtgttcaatctttttttttttttcctgtgtcatttaattttattacactggATATAATTTGTAAATTACATGTGTTTTCTTTGTATATATGGATTTCACTGGTTGTTCCCAACATCCGgggaacatttcaagtcaacagcatcattagaaatatgttttctcgGATAAATAAGGATGTGTTCGAGAACAAAGGATTGTCCcttctgtaaatgttttatttgtaatatcTACGCAAGTGCTGTTaatggccagaagttaacaagaattatttctCTACAGTTAATGTACaataataattactgtttttacttcACTGTGAGTGTTGGGTTTCGGggtatacattaataaaatacaatttaatgggtgaattaataaataataataagaatactctgtgaaattactgtttttactgtactgtgggggttaggtttagggggtagatgcaaaaataaaatgtattggtaatttggtaaataatataaataattcttgctAACTTCCGGctacagctgtatcccttctgaTGATATTTGTCACAACACTGTTACATGCAGCGAGATTGGATCCCTTCAACCATACAAACATCAGATTTGTGTGATTTTTGTGTGACACATTTGAGATTTCAGGGGAACATAGGTCAGTTGAGAGGTTGCATAGAAAGAAGAAATGAGATGCATTAGGGGGGGAGAAAGgaggtaaagaaaaaaaaactgtccttgAAGTAGGGCAGAGTGAGATCAGGGGGAAAAAGTTTTACGACctgggcaccttgatgtcaaaacaacatcaaattgacatctaaaattggCGTCAGGACAGTCCTATAATCAAAccaattttttacatattttaacagCAACGTAGATGTCGATTTGACATCAAGGTAATCAATTGACGTTAAAATTGATTCTAGGTAGTTTCCTTGCATTGAAGGGgtacaaaataaagtttttatttgtaactgaagttttgaaaattaataaaatatatatatatttagctatAA
>TCONS_00073788
CTTTCCAAGTAAAGTTCTGTGATACACTCCGACTCTGAATGTTTGCAGTCAGTGCATTACAGAACTTTGTTTTGGGAGT

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0031369 translation initiation factor binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000083365 ENSDARG00000097886

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073787 False 2441 lncRNA 0.39 2 1642605 1649744
TCONS_00073788 True 79 miRNA 0.41 1 1644683 1644761

Neighbor

gene id symbol gene type direction distance location
XLOC_037560 agps coding downstream 2640 1589672 ~ 1639965 (-)
XLOC_037559 si:ch211-222f23.6 coding downstream 142884 1485234 ~ 1499721 (-)
XLOC_037557 rbm45 coding downstream 158403 1463052 ~ 1484202 (-)
XLOC_037556 osbpl6 coding downstream 182620 1391535 ~ 1459985 (-)
XLOC_037555 FP102120.4 coding downstream 263115 1379376 ~ 1379490 (-)
XLOC_037562 hnrnpa3 coding upstream 43182 1692926 ~ 1703801 (-)
XLOC_037563 CR848724.1 coding upstream 99175 1748919 ~ 1749036 (-)
XLOC_037564 NA coding upstream 281684 1931428 ~ 1936169 (-)
XLOC_037565 hoxd3a coding upstream 287305 1937049 ~ 1959917 (-)
XLOC_037566 dre-mir-10b-1 coding upstream 303212 1952956 ~ 1955923 (-)
XLOC_037554 NA non-coding downstream 337182 1302937 ~ 1305423 (-)
XLOC_037551 NA non-coding downstream 461151 1177901 ~ 1181454 (-)
XLOC_037550 NA non-coding downstream 613955 1027015 ~ 1028650 (-)
XLOC_037549 CABZ01066922.1 non-coding downstream 639050 1003441 ~ 1003555 (-)
XLOC_037572 NA non-coding upstream 501178 2150922 ~ 2173197 (-)
XLOC_037573 NA non-coding upstream 530775 2180519 ~ 2207258 (-)

Expression


Co-expression Network