G1828052 (LOC106595915)


Basic Information

Item Value
gene id G1828052
gene name LOC106595915
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 10035517 ~ 10061525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2093848
catccttgctgtgtgtgtgtgtgtgtgtgtgtgtgagagcttttctttgacatctgctggcggaaattactgatttacagtttaggagggttacctagtgttaataatgggatatgtaggagggtgagccggtcaaggatcgattcagacaaggtggtctattgtatgacaagtgacagtttaattatgagtaaagatatctggtacaacgtatacgggccatttcattcggttcttaaggaaccagcagaaaagaagcgcagataacagagtgcacatgtctcatatacagaacagaaagtaggttgattctagaagatcgggtcttcgggttggttcaggctgaggtgtagtcttcttggattggccctgttgggccgtccgtcatccctctgagtcttgttctttgtcacacaatgttcagctaaaaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagggtgtgtagtgtgtgctgtgtgtgtgggtgctgtctctt
>TU2093849
CAACAGGTTAGTGTGTATGTCAACTACATCCTCTGTCCATGGAGCACTACATATATGTCTCCCATGGGATGGAATGTTTTCAGGTCCCCTGGATACAGAACCCAACAGCTGTTCAGAAGTAACATCAACAATGGTCAGTGGAATTATCAAACTGGTCAGAGCACACGTACCTTGCCAGTCTCCTCTAAGAATGGGTCTCAGTACTCTTTTGGGTCCACATATCCACCACACATCAGCCAGACCACTAGTTTGGTTTAGGCCTGTAACTGGCCAAGTGGCATAAATGGTTATGTTACTGCTGCAATCAGCTTCAGGCAATCTCCCATAGTCCATGCCACTACCTGTACCCGTGATGCAACTGTAATTGCCCCCATATGCCTTAACACCCCAAGGGGCCCGATGAGGAGGTACTGTAGGAAACACAAGGCTCAAAGAGGAGCAGAGGGTTGAATTGGGCTgaacctggtaaaaacctctcagaatacacaaccacccctctccttctcctatagCAAATGGGTGTGTAGCCAGAACAAGTCTAGCATGACTACAAATAGTGCAGTCCTTTCTTCTCAGGGGTTTTAGCTGTGTACCTCATATAAGACAGCCACAAATTGTCCCTACCATCAAAACCAGTCTCAGTGCCTAATTGATCAATAGCTGTGTAGTCTCTAACATTAATTACCTGAATGGGATTTTTTAACACAGTGGTGGTAGGTGGCAGGTTCGGTCCAGGGGTGGTAGAGGAGTGTGTCTGGCCCTGGTTCGTCTGGGACCTCTGGTTTTGGCAGCTCCCTAATAGAAAACACACCCATCGTGTCTGTCCCGGTCCTTTGTAGTCCGAGGGTGTAAGTGCCTGCATCAGAGAgcttaatagttttgatggttaGTAGGATTTCATCACCTTTACAAAGTTCAACAGTGCTCCCAGGTTTTCCCCATATgatggaaaacctatccacctttgtgggatcccctatgctataataataccctcttctccaatcctagaattgtcccaagttggttatcatgtaatccccatatggacaccctcccccattacacaggtacactgacactcctgtaaagccccaccctctcccagagaacacatcactagcaagagccagacacatcttcacttctatgaacaaaaacaggggtgacaggacagggagggttacttcattcgagagatggcccccggaattctgttaattccagttctcctctcgaacactgtttattgttcgacagtgtcatGTGTCCTACCCTCCCCCGTGCGATATGAATccgggtagctctttcagctagctgtcaccaggagtccttgtatggtccccccaacaagcctctgggactggattgagtgacttcacctgtagttcacctgtaatgcataaaatcctggacatacaggcttggttaacaaacagtttctcatatgttttatctgattatatatttagtttcttatccaataggccccatcctatcctagaccacaatttacccatcccccttttgatacctggctctgcccaggtaacaaccttacctactctaaataatgacttaggtaagattagtatattatccttctgttctgacattatcatgtaggagcgcccctttcattttccacatgtccaattctccctttTGTCTCCACTCAGTAACTGTTATCTACACATTCTGTTATCTTTGCTCGTCCTGGCTCCCTTTTAAaacttctcctctctgctctccaaccttcaaggtctctgcagtgcaggggagggctcttctgtctgccttttccccttatctgtctgtagctcgttttctcatgtttccaaatttgaactaaatgtctcactgtttggctttatctaaactcatggatttttttttttttgaaaaacatgtctatggtggcactttctaaagtccttatataggttaattaaaccccactataattaatttacctttaaaaaataaaaaataaaaacaaaccgtATTACCCATGACCACAAATTAAATATTCAAATGGCACCCCCTATACACAGGTGTTAAAACCAAACACAAATATCTCAATTTCTTCCCTGCCCTGTTTGCTCAAAATATGTCCCAAATACTTAACATGAGTCTACCATAAATAAAACTTATCCTAGCTAAATTTTCACACCacgttcatcagagaaaatataatgacactataatgtaaatttcactgcctttttgtattaaattaccttaatatcagtattacaaattaccctagattctccatccaaattgctttccaatgaggctgatcagaccccaAAGGAAAGTTACAATGGAGGTCATAAgctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagggtgtgtagtgtgtgctgtgtgtgtgggtgtgggagctatcctgtatgggacctaacatgttttactgtgaaaatacgttgtctcagttatagcaatgtaatagcagtaggctggtcacctgcataagaaatagcacttccttacaaaTCCCTCTCTTCACGTCTCCCCAGAGACGTGACACAACCTAACTAGATCCAGACACAAAAAGAAAACTTTTCCCAGAAGGAAAAGTTTTGTGATTCCCTCTCTTCACATCTCCTAAGAGATGTGACACAAACTAGGCTAACAATTACAAAGTTTAAAATACCTTCATGTTCTCCATTCGATCCCACTATGTACTAGATTGGCTACCAGCCACCTAGGAACTTGCAACCCTCATGTCAAAAGAGAACAACAGCTCATtgaaaaacagaacaaaagaaAATGATGTGAAATTTAAGCCCCCCTTTTTGACACCCACTAGGGTGTCACTCATTATCCCTTATTTCAGCAGTCATAGCATTTCATGAAAAGAAAAAACAAAACCTAGTAGGCACTCTCAACCTCATCCTCAAATTCGGGCAGGTCATTAGCAAGCAGAGGAAACATCTGGGAAAGGGGGGAAGGGTCAATAGCTCTAGAGATAACCCTAGTGGTAAGGGAACGGATACATGGAATGCAACAGCATCCACAGAGAACCAAAATGGCCGCGAACACCGAAATGGAGACCAAAATGGAGGAGACCAGGGTTTTATATTTACCAAAGGCACTCATCCAGGAGTCCCACATTGAGGTATCAATCCCAGAATGAGATTTCATTTTACCATTAAGAGTCCTCAAACCTTCTAGGGCTATGGTCAAGCTACCATCGGAGGCTGTGTTATTAGGGATGAAAGTACAACACTGTTCACCAAACATAGTGCAAGCTCCACCTTTCTCTGCCAGTAGCATATCCACTGCAATGCGATTCTGGAATGTATTCTATCCACATTTTTATTAACAGTGCACCACCAACAAATGGAGGACTCAAACCCAGCTGCCACCTGATCCACCAACTTGTACTCGTCAGGAACTCCCCTTGGGACTCCAATGGCGTCTATGTACGTCGGATCACCACTAGATGGGGTGGTGGCACGCCTGGAACGTCCCCTCCAATATTCAGGGTTCACCCTCTGGACCCTAAGGATGAGGTCTCCAGCCTCTGTAGGGTAGATAGAAACAGGCAAAAGGAGAGTAACAAGTGCACAGCTTCCAGTAGTATTGGAGGGTAATTTATCAAACAGGACAGTGTTGCCACACCACCACCTCACATCTGCTCTGGATATTGGACTGAAACTCCCAACAATGTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2093848 False 566 lncRNA 0.46 2 10035517 10042607
TU2093849 True 3728 lncRNA 0.44 3 10040751 10061525

Neighbor

gene id symbol gene type direction distance location
LOC110531428 glrx3 coding downstream 120809 9882043 ~ 9914708 (-)
LOC110512783 tcerg1l coding downstream 423705 9406037 ~ 9611812 (-)
LOC110532938 LOC105009682 coding downstream 826181 9179686 ~ 9209336 (-)
jakmip3 LOC106577179 coding downstream 901661 9049200 ~ 9133856 (-)
dpysl4 dpysl4 coding downstream 999883 8998440 ~ 9035634 (-)
LOC110502268 LOC106604541 coding upstream 78572 10140097 ~ 10154289 (-)
LOC110502266 LOC106604534 coding upstream 98954 10160479 ~ 10206199 (-)
LOC110502265 LOC106604528 coding upstream 147976 10209501 ~ 10216489 (-)
LOC110502263 LOC106604517 coding upstream 200541 10262066 ~ 10308838 (-)
LOC110502262 LOC106604523 coding upstream 249251 10310776 ~ 10328183 (-)
G1828016 NA non-coding downstream 28892 10006377 ~ 10006625 (-)
G1828014 NA non-coding downstream 31479 10003692 ~ 10004038 (-)
G1828012 NA non-coding downstream 33228 10000541 ~ 10002289 (-)
G1828008 NA non-coding downstream 38135 9996882 ~ 9997382 (-)
G1828004 NA non-coding downstream 41671 9993628 ~ 9993846 (-)
G1828066 NA non-coding upstream 50716 10112241 ~ 10126480 (-)
G1828083 NA non-coding upstream 76293 10137818 ~ 10138528 (-)
G1828262 NA non-coding upstream 116668 10178193 ~ 10178408 (-)
G1828263 NA non-coding upstream 117060 10178585 ~ 10178824 (-)
G1827761 NA other downstream 346673 9688457 ~ 9688844 (-)
G1827690 NA other downstream 490544 9544383 ~ 9544973 (-)
G1827656 NA other downstream 569027 9466070 ~ 9466490 (-)
G1827339 NA other downstream 875902 9159197 ~ 9159615 (-)
G1829417 LOC106604325 other upstream 1141542 11203067 ~ 11203996 (-)
G1829918 NA other upstream 1671905 11733430 ~ 11733926 (-)
LOC118943913 drgx other upstream 1739158 11798161 ~ 11807866 (-)
LOC110502234 LOC106604225 other upstream 1856554 11907827 ~ 11953940 (-)
LOC110502269 LOC106604550 other upstream 2331438 12392924 ~ 12411810 (-)

Expression


Co-expression Network