G1828066


Basic Information

Item Value
gene id G1828066
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 10112241 ~ 10126480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2093864
cgccagctctgcaaattcagcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgaacgcttccaacaaaactaatgacctgcagtggatcaaaccattgtgaggcaaagggcgggggttgcaatcttttgaaacttaaaaacgcgctattaagtgtctataatcagcataagtgctttcattgcgttcattcatattattgaaattacatagatatgtttacagtgatatattggggggggaaatcatatttttcccaggataggggggtcgtgtccccctgggatttctgcctatgcacgtgatatctcctcactcacgtggttgattgaaggacgtggttgattgaagaactgatttgtgttgatggcaattaccatataaattcaaagatgaagaaggagggatgactagaaacgattcagttgacggttttatgtgtggattaattgtcggagtagaggaatttgtgtaattcaggtaaaaaaataacgcaatgtttatatcacaggacaaattagctagcgggttaactcgctaaattgccatacatgtttcatgcttttcggcctgtccccaatttaatgccattggtcacatattttgttttgatattttaacctgcgtgtctttatcgcgtctgcaagcacgtagctggtatgtttataatgaactttatctgtcgaaaatggaaattgtgaggtttgaggtcttgtggtggcttactactttgtcccgctccg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2093864 True 740 lncRNA 0.41 2 10112241 10126480

Neighbor

gene id symbol gene type direction distance location
LOC110531428 glrx3 coding downstream 197533 9882043 ~ 9914708 (-)
LOC110512783 tcerg1l coding downstream 500429 9406037 ~ 9611812 (-)
LOC110532938 LOC105009682 coding downstream 902905 9179686 ~ 9209336 (-)
jakmip3 LOC106577179 coding downstream 978385 9049200 ~ 9133856 (-)
dpysl4 dpysl4 coding downstream 1076607 8998440 ~ 9035634 (-)
LOC110502268 LOC106604541 coding upstream 13617 10140097 ~ 10154289 (-)
LOC110502266 LOC106604534 coding upstream 33999 10160479 ~ 10206199 (-)
LOC110502265 LOC106604528 coding upstream 83021 10209501 ~ 10216489 (-)
LOC110502263 LOC106604517 coding upstream 135586 10262066 ~ 10308838 (-)
LOC110502262 LOC106604523 coding upstream 184296 10310776 ~ 10328183 (-)
G1828052 LOC106595915 non-coding downstream 50716 10035517 ~ 10061525 (-)
G1828046 NA non-coding downstream 60080 10014324 ~ 10052161 (-)
G1828016 NA non-coding downstream 105616 10006377 ~ 10006625 (-)
G1828014 NA non-coding downstream 108203 10003692 ~ 10004038 (-)
G1828012 NA non-coding downstream 109952 10000541 ~ 10002289 (-)
G1828083 NA non-coding upstream 11338 10137818 ~ 10138528 (-)
G1828262 NA non-coding upstream 51713 10178193 ~ 10178408 (-)
G1828263 NA non-coding upstream 52105 10178585 ~ 10178824 (-)
G1828357 NA non-coding upstream 247265 10373745 ~ 10374676 (-)
G1827761 NA other downstream 423397 9688457 ~ 9688844 (-)
G1827690 NA other downstream 567268 9544383 ~ 9544973 (-)
G1827656 NA other downstream 645751 9466070 ~ 9466490 (-)
G1827339 NA other downstream 952626 9159197 ~ 9159615 (-)
G1829417 LOC106604325 other upstream 1076587 11203067 ~ 11203996 (-)
G1829918 NA other upstream 1606950 11733430 ~ 11733926 (-)
LOC118943913 drgx other upstream 1674203 11798161 ~ 11807866 (-)
LOC110502234 LOC106604225 other upstream 1791599 11907827 ~ 11953940 (-)
LOC110502269 LOC106604550 other upstream 2266483 12392924 ~ 12411810 (-)

Expression


Co-expression Network