G1828583


Basic Information

Item Value
gene id G1828583
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 10470847 ~ 10471685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2094416
tccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtgggggtggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttctggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggccttttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacgaccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattattgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgtttttcatgatgctctctgctcttttaacggacctttgagactatcacagtgcagatgcattcatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2094416 True 839 lncRNA 0.43 1 10470847 10471685

Neighbor

gene id symbol gene type direction distance location
LOC110502258 lrrfip2 coding downstream 311 10457313 ~ 10470536 (-)
LOC110502259 LOC106604487 coding downstream 45732 10396340 ~ 10425115 (-)
LOC110502261 LOC106604510 coding downstream 106344 10356692 ~ 10364503 (-)
LOC110503047 NA coding downstream 127642 10338539 ~ 10343205 (-)
LOC110502262 LOC106604523 coding downstream 142664 10310776 ~ 10328183 (-)
cutc cutc coding upstream 14398 10486083 ~ 10492607 (-)
LOC110502255 kcnip2 coding upstream 35102 10506787 ~ 10603546 (-)
LOC118943886 NA coding upstream 145160 10616845 ~ 10734529 (-)
LOC110502250 LOC106604404 coding upstream 460080 10931765 ~ 10969161 (-)
ldb1a ldb1 coding upstream 502670 10974355 ~ 11010605 (-)
G1828582 NA non-coding downstream 1397 10469243 ~ 10469450 (-)
G1828563 NA non-coding downstream 25854 10444773 ~ 10444993 (-)
G1828562 NA non-coding downstream 26378 10443604 ~ 10444469 (-)
G1828561 NA non-coding downstream 27489 10443069 ~ 10443358 (-)
G1828365 NA non-coding downstream 82920 10387596 ~ 10387927 (-)
G1828584 NA non-coding upstream 124 10471809 ~ 10472537 (-)
G1828570 NA non-coding upstream 5284 10476969 ~ 10477464 (-)
G1828590 LOC106604458 non-coding upstream 28582 10500267 ~ 10504851 (-)
G1828785 NA non-coding upstream 298690 10770375 ~ 10770581 (-)
G1828792 NA non-coding upstream 302897 10774582 ~ 10774787 (-)
G1827761 NA other downstream 782003 9688457 ~ 9688844 (-)
G1827690 NA other downstream 925874 9544383 ~ 9544973 (-)
G1827656 NA other downstream 1004357 9466070 ~ 9466490 (-)
LOC110512783 tcerg1l other downstream 1045366 9406037 ~ 9611812 (-)
G1827339 NA other downstream 1311232 9159197 ~ 9159615 (-)
G1829417 LOC106604325 other upstream 731382 11203067 ~ 11203996 (-)
G1829918 NA other upstream 1261745 11733430 ~ 11733926 (-)
LOC118943913 drgx other upstream 1328998 11798161 ~ 11807866 (-)
LOC110502234 LOC106604225 other upstream 1446394 11907827 ~ 11953940 (-)
LOC110502269 LOC106604550 other upstream 1921278 12392924 ~ 12411810 (-)

Expression


Co-expression Network