G1829417 (LOC106604325)


Basic Information

Item Value
gene id G1829417
gene name LOC106604325
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 11203067 ~ 11203996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2095319
CTCTCTCAAAGAGTTTGCAAGCGTGTGTATGCGTGTACCTCTATAGCACTATAAGCATCTAGGAAGAGGTTCCGGCCACTGATGCTGCAGTAGACACAGCCCAGGGTCATGGAGAGACAGAAGCAGAAGAAGTAGCGCTGGTTAAAATGGCCAACACAGTTATTCAGCCACGGACAATGATGATCCATTTTCAGAATGCACGTGTTGCAGATTCCACAGTGGTGAGTCCTGGCTGGTTTGGGGATGATACACTTCTTACACACGGACACAAACGGAATGTCATTCTTTACcgtaggGGGGTATCCTGGGGCGGTTTTGGTGGCTTTATAGTAGTGGAAGACAATCATGATGAGGTTCCAGTGTCCATAACCGATGTGCCAGACTATCCAGGGTGGAGAGTAGGTATTGAGAATCAGGGGCAGCAGACCCACATAGGCTATCAGCAGGATAGAACTGGTCAGTATCACCACCAGACAGACAAacacc

Function

NR:

description
probable palmitoyltransferase ZDHHC16 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2095319 True 486 TUCP 0.49 4 11203067 11203996

Neighbor

gene id symbol gene type direction distance location
mettl18 mettl18 coding downstream 11487 11176234 ~ 11191580 (-)
LOC110502244 LOC106604342 coding downstream 33242 11128133 ~ 11169825 (-)
ldb1a ldb1 coding downstream 192462 10974355 ~ 11010605 (-)
LOC110502250 LOC106604404 coding downstream 233906 10931765 ~ 10969161 (-)
LOC118943886 NA coding downstream 468538 10616845 ~ 10734529 (-)
LOC118943814 NA coding upstream 7762 11211697 ~ 11220145 (-)
LOC110503078 LOC106576847 coding upstream 82002 11285998 ~ 11290411 (-)
LOC110503077 LOC106576846 coding upstream 93731 11297727 ~ 11327706 (-)
LOC110502238 arhgap22 coding upstream 295131 11494157 ~ 11515983 (-)
LOC110502237 LOC106604271 coding upstream 325795 11529791 ~ 11546694 (-)
G1829252 NA non-coding downstream 273026 10928073 ~ 10930041 (-)
G1829254 NA non-coding downstream 281236 10921575 ~ 10921831 (-)
G1828851 NA non-coding downstream 386351 10816462 ~ 10816716 (-)
G1828850 NA non-coding downstream 386902 10815963 ~ 10816165 (-)
G1828819 NA non-coding downstream 409850 10792199 ~ 10793217 (-)
G1829461 NA non-coding upstream 91190 11295186 ~ 11296020 (-)
G1829518 NA non-coding upstream 185656 11389652 ~ 11390221 (-)
G1829550 NA non-coding upstream 222637 11426633 ~ 11426846 (-)
G1829552 NA non-coding upstream 223556 11427552 ~ 11428049 (-)
G1827761 NA other downstream 1514223 9688457 ~ 9688844 (-)
G1827690 NA other downstream 1658094 9544383 ~ 9544973 (-)
G1827656 NA other downstream 1736577 9466070 ~ 9466490 (-)
LOC110512783 tcerg1l other downstream 1777586 9406037 ~ 9611812 (-)
G1827339 NA other downstream 2043452 9159197 ~ 9159615 (-)
G1829918 NA other upstream 529434 11733430 ~ 11733926 (-)
LOC118943913 drgx other upstream 596687 11798161 ~ 11807866 (-)
LOC110502234 LOC106604225 other upstream 714083 11907827 ~ 11953940 (-)
LOC110502269 LOC106604550 other upstream 1188967 12392924 ~ 12411810 (-)
LOC110502275 LOC106604599 other upstream 1376820 12580816 ~ 12651383 (-)

Expression


Co-expression Network