XLOC_037578 (scrn3)


Basic Information

Item Value
gene id XLOC_037578
gene name scrn3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 2560219 ~ 2573121 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073810
CTGCtcttattttaattatgattatttcataactatattttCATGGTTGTCAGATCTGTTATTTATATTACTCTAatttattatatatcatatttatttattttttgcgacAGCAAAATCAAATAGCCAATCAACACTGCTACTGCACAACCACGTGACTTGACGTGTATAGAAAGCGCCATTGCCCCGCCTACTTTATCGCTGACTAAGCACGTATATGGATCGACCGCACTGCTGTGTCCCTTATCCAGCAGATTGTTTATGTGATTATGAATCAGGTGAAGGTGCATGCGGATTCATGTCAAAGTCTGCGGCAGTTTTGTTTATGGGGAAAGGAAAAGGAAAGTAAACAGATGCTTGTTCTCTTCGAGCAGAACACAGGTTGTCTTTGTTTCTGATACATGTATATACGCTGAGGTAAATCATATTATTTAATCATATTAACTTTACCTAATGCATGCGAGTTATATGCTAATTTATTTTCGGATAACCTCTTAAAAGCTGCCATATTGGGGGTAAATAATGTTATATGCAAAGGCCTGAGTCATACTCAGAGTTTATAAATGatgttaatgtgttattttgtttATGATTAATGATTATCGTGTACTTATtgcataaatatttacatttggcATTGTTACTGTCATTAATTTTCTGCACATGAACAGTGAATGCTAATGAGCAAAATAAATCGAccaattaaactttatttatgtatttgtttagatTTCAGGATGTACCCAAGGTCTTGTGACACATTTGTAGCCTTGCCGCCGTCCACTGAGGGTCAGCGGATAATCTTCGGGAAGAACTCGGACAGACCCTGCGATGAGGTTCAGGAGGTGGTCTACTTCCCTGCAAAGGAACATGAACCAGGAAAAGTTGAGTGCACGTATATAGAAATCGAGCAGGTGGAAAAGACGTTTGCAGTGGTGCTGAGTCGCCCCGCCTGGCTGTGGGGGGCAGAGATGGGGGCAAATGAGCATCAGGTGTGCATTGGGAACGAGGCAGTGTGGGGCAGAGAGAGCGCGGATGGTGACGAGGCACTTCTGGGCATGGATCTTGTCCGGCTGGCTCTGGAGCGGGCCGACACGGCGGAGAAAGCTGTGGACGTCATCACAGATCTGCTGGAGAAATACGGCCAGGGAGGAAACTGCATGGAGGACGAGTGTGGATTCACGTACCACAACAGCTTCCTCATATCAGACCGCAAAGAAGCCTGGGTGCTGGAGACTGCTGGGAAACACTGGGCTGCGGAGAGAGTGGAGGCCGGCTACAGGAACATCTCCAATCAGTACTCCATTACTACTAAGATTGACAAGGAGCACCCGGGGATGAGGACGTACGCGAAAGAGCAGGGCTGGTGGGACGGAGAGAGCGAGTTCAGCTTTACTGATGTTTACTCGTACTCCAGCACCGCCCGCATCCAGGCGGCAGGCGGAAGATACTGTGAGGGACAGAAACTGCTGCAAAAGAGCAACGgcCACATCTCTGCACAGACGATGATGGATATTTTGCGGGATAAGGAGAGCGGGATCAACATGGAGGGGATGTTCATGAGCACAGGCAGTATGGTGTCTGTCATCCCCAAAGCTGATCATTTACCCGGAGTCCACTTCTTCACCGCCACTCCAGACCCCGAACGGTCTGTGTTTAAGCcgtttgtgtttgtgtctgaCGTGCCGCCGCTGAAACACACCAGTTCTCCATGTTTCGGGGAGGAGGATCCAGTGAAGAAGAAGCCCCGTTTCCAGAGCAAACCCAACCGCAAACACCCGCTGTTCCTGAAGCACGAGGTGGCGGCGGCCATCATCGACAGCTCTGGGGAGAGAGGACAGAAGATAGAGAAGGAGATGAGAGATCTGGAGAAGCAGAAGCTGGAGGAGATGGAGAAATATCTGACTGAGGGCGTGGAAGACTCTTCCCTGCTGGTTCATCTCTTCACAGACACCGTAGAGGAGGAGTTCAGTGTTTACAGCAGCGCATGACTATATATTCACACGCATGGCCACCATATAAACACTAATAACACACATTTACAGTTTGGAATTATGCCATTAAAATAGGTGACTCACAAGTGTTACGAACAGAATCTTATATTGTGTGAGATTTATCTTGTTTGCATGTTTGTAAAGTTAataatttcagagttgtttgtaaatgtaattaaggtaacactttagtttgttACTTTAGTTTGGTTTATTACCTGTAAATTATTATGATATTGGCTgattattagcacttataaagtatgatcttattctacatccctagtGCCGGTTTGtaatttattgagctaaaagtcatagtGAGAACTGTACCTTAAACTAAAGCACGACTAATGAATAATTACATCATTAACAAGGGATTAAATTGGATTTGTAGTTATTCTGTAATGATACAGTTgaaaacaaatgaacattttcactGGAAGGATAATAATAAGGATATGCTGTATCCCTTAATCTTAATGAAAAGACAATATCAATTGAACTCTTTTAATTCCTTAAATTGGAGTCAGACTTTGAGTTAGATTTTTTTGTAGTGCAACAAGTCACCTTATTCAgttgaaaatatttgtttttaaatattcagcaaaataaatttgcatatattatatattactctAGCTATTCCGAACTGATTTATACAGACCTGTTGACTTTACTTACAGTATTTAGGGCAAGTACATTATAACTATAATAGAATTACCCATAAATCAACAGTAATCTTTTACTTcccttaaaaaaaatgttcattctttAGAGTTATTGTTCGTTGTTAGTTCATGCTAACCAAATGGGAGCTTACTGTaaagtaaatataatttaatatatacttatataactCAAACACAACTTGAATACCAAGATTCTCCTGCTGGACTTTTCTGTGCAAATGTGAAAATTGTCGCCCTCGTGTGTCTGTGAGAGGAAACACAAGCACTGAAAATACACACTTCATAAGGGAAATTAAAATCTTAATTATATCTAGTTTTATGTTTACTGGAtagtttttatgtaaaaaaaaaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatacatatatatatatagaattagtTTTTGCGGGTAAAAAAatgacatatacatatacatgtgtatatgtgtgtgtgtgtgtgtgtgtgtatatatatacacacacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatgtatatataaatatatatatgtatatataaatatatatatgtatatatatatata
>TCONS_00073811
GCGGATTCATGTCAAAGTCTGCGGCAGTTTTGTTTATGGGGAAAGGAAAAGGAAAGTAAACAGATGCTTGTTCTCTTCGAGCAGAACACAGGTTGTCTTTGTTTCTGATACATGTATATACGCTGAGatTTCAGGATGTACCCAAGGTCTTGTGACACATTTGTAGCCTTGCCGCCGTCCACTGAGGGTCAGCGGATAATCTTCGGGAAGAACTCGGACAGACCCTGCGATGAGGTTCAGGAGGTGGTCTACTTCCCTGCAAAGGAACATGAACCAGGAAAAGTTGAGTGCACGTATATAGAAATCGAGCAGGTGGAAAAGACGTTTGCAGTGGTGCTGAGTCGCCCCGCCTGGCTGTGGGGGGCAGAGATGGGGGCAAATGAGCATCAGGTGTGCATTGGGAACGAGGCAGTGTGGGGCAGAGAGAGCGCGGATGGTGACGAGGCACTTCTGGGCATGGATCTTGTCCGGCTGGCTCTGGAGCGGGCCGACACGGCGGAGAAAGCTGTGGACGTCATCACAGATCTGCTGGAGAAATACGGCCAGGGAGGAAACTGCATGGAGGACGAGTGTGGATTCACGTACCACAACAGCTTCCTCATATCAGACCGCAAAGAAGCCTGGGTGCTGGAGACTGCTGGGAAACACTGGGCTGCGGAGAGAGTGGAGGCCGGCTACAGGAACATCTCCAATCAGTACTCCATTACTACTAAGATTGACAAGGAGCACCCGGGGATGAGGACGTACGCGAAAGAGCAGGGCTGGTGGGACGGAGAGAGCGAGTTCAGCTTTACTGATGTTTACTCGTACTCCAGCACCGCCCGCATCCAGGCGGCAGGCGGAAGATACTGTGAGGGACAGAAACTGCTGCAAAAGAGCAACGgcCACATCTCTGCACAGACGATGATGGATATTTTGCGGGATAAGGAGAGCGGGATCAACATGGAGGGGATGTTCATGAGCACAGGCAGTATGGTGTCTGTCATCCCCAAAGCTGATCATTTACCCGGAGTCCACTTCTTCACCGCCACTCCAGACCCCGAACGGTCTGTGTTTAAGCcgtttgtgtttgtgtctgaCGTGCCGCCGCTGAAACACACCAGTTCTCCATGTTTCGGGGAGGAGGATCCAGTGAAGAAGAAGCCCCGTTTCCAGAGCAAACCCAACCGCAAACACCCGCTGTTCCTGAAGCACGAGGTGGCGGCGGCCATCATCGACAGCTCTGGGGAGAGAGGACAGAAGATAGAGAAGGAGATGAGAGATCTGGAGAAGCAGAAGCTGGAGGAGATGGAGAAATATCTGACTGAGGGCGTGGAAGACTCTTCCCTGCTGGTTCATCTCTTCACAGACACCGTAGAGGAGGAGTTCAGTGTTTACAGCAGCGCATGACTATATATTCACACGCATGGCCACCATATAAACACTAATAACACACATTTACAGTTTGGAATTATGCCATTAAAATAGGTGACTCACAAGTGTTACGAACAGAATCTTATATTGTGTGAGATTTATCTTGTTTGCATGTTTGTAAAGTTAataatttcagagttgtttgtaaatgtaattaaggtaacactttagtttgttACTTTAGTTTGGTTTATTACCTGTAAATTATTATGATATTGGCTgattattagcacttataaagtatgatcttattctacatccctagtGCCGGTTTGtaatttattgagctaaaagtcatagtGAGAACTGTACCTTAAACTAAAGCACGACTAATGAATAATTACATCATTAACAAGGGATTAAATTGGATTTGTAGTTATTCTGTAATGATACAGTTgaaaacaaatgaacattttcactGGAAGGATAATAATAAGGATATGCTGTATCCCTTAATCTTAATGAAAAGACAATATCAATTGAACTCTTTTAATTCCTTAAATTGGAGTCAGACTTTGAGTTAGATTTTTTTGTAGTGCAACAAGTCACCTTATTCAgttgaaaatatttgtttttaaatattcagcaaaataaatttgcatatattatatattactctAGCTATTCCGAACTGATTTATACAGACCTGTTGACTTTACTTACAGTATTTAGGGCAAGTACATTATAACTATAATAGAATTACCCATAAATCAACAGTAATCTTTTACTTcccttaaaaaaaatgttcattctttAGAGTTATTGTTCGTTGTTAGTTCATGCTAACCAAATGGGAGCTTACTGTaaagtaaatataatttaatatatacttatataactCAAACACAACTTGAATACCAAGATTCTCCTGCTGGACTTTTCTGTGCAAATGTGAAAATTGTCGCCCTCGTGTGTCTGTGAGAGGAAACACAAGCACTGAAAATACACACTTCATAAGGGAAATTAAAATCTTAATTATATCTA
>TCONS_00073812
AAAGGAAAAGGAAAGTAAACAGATGCTTGTTCTCTTCGAGCAGAACACAGatTTCAGGATGTACCCAAGGTCTTGTGACACATTTGTAGCCTTGCCGCCGTCCACTGAGGGTCAGCGGATAATCTTCGGGAAGAACTCGGACAGACCCTGCGATGAGGTTCAGGAGGTGGTCTACTTCCCTGCAAAGGAACATGAACCAGGAAAAGTTGAGTGCACGTATATAGAAATCGAGCAGGTGGAAAAGACGTTTGCAGTGGTGCTGAGTCGCCCCGCCTGGCTGTGGGGGGCAGAGATGGGGGCAAATGAGCATCAGGTGTGCATTGGGAACGAGGCAGTGTGGGGCAGAGAGAGCGCGGATGGTGACGAGGCACTTCTGGGCATGGATCTTGTCCGGCTGGCTCTGGAGCGGGCCGACACGGCGGAGAAAGCTGTGGACGTCATCACAGATCTGCTGGAGAAATACGGCCAGGGAGGAAACTGCATGGAGGACGAGTGTGGATTCACGTACCACAACAGCTTCCTCATATCAGACCGCAAAGAAGCCTGGGTGCTGGAGACTGCTGGGAAACACTGGGCTGCGGAGAGAGTGGAGGCCGGCTACAGGAACATCTCCAATCAGTACTCCATTACTACTAAGATTGACAAGGAGCACCCGGGGATGAGGACGTACGCGAAAGAGCAGGGCTGGTGGGACGGAGAGAGCGAGTTCAGCTTTACTGATGTTTACTCGTACTCCAGCACCGCCCGCATCCAGGCGGCAGGCGGAAGATACTGTGAGGGACAGAAACTGCT
>TCONS_00073813
GAAAGGAAAAGGAAAGTAAACAGATGCTTGTTCTCTTCGAGCAGAACACAGGTTGTCTTTGTTTCTGATACATGTATATACGCTGAGatTTCAGGATGTACCCAAGGTCTTGTGACACATTTGTAGCCTTGCCGCCGTCCACTGAGGGTCAGCGGATAATCTTCGGGAAGAACTCGGACAGACCCTGCGATGAGGTTCAGGAGGTGGTCTACTTCCCTGCAAAGGAACATGAACCAGGAAAAGTTGAGTGCACGTATATAGAAATCGAGCAGGTGGAAAAGACGTTTGCAGTGGTGCTGAGTCGCCCCGCCTGGCTGTGGGGGGCAGAGATGGGGGCAAATGAGCATCAGGTGTGCATTGGGAACGAGGCAGTGTGGGGCAGAGAGAGCGCGGATGGTGACGAGGCACTTCTGGGCATGGATCTTGTCCGGCTGGCTCTGGAGCGGGCCGACACGGCGGAGAAAGCTGTGGACGTCATCACAGATCTGCTGGAGAAATACGGCCAGGGAGGAAACTGCATGGAGGACGAGTGTGGATTCACGTACCACAACAGCTTCCTCATATCAGACCGCAAAGAAGCCTGGGTGCTGGAGACTGCTGGGAAACACTGGGCTGCGGAGAGAGTGGAGGGTAAATTAGGAATTAGGGAttagtaattaatttaatataaagttAATATTGAGATATTTAAAagatgttttatttgtactgCACTGTGTTCACCTCATGGAAAAGTAAAGCAGTCTTGTGGAGACCTGTGGATGTCATGTGTGTTTTATTCTGCATATGCTGATCACATTtcttctaaatttaaaataacactattgtcatttatagcatttttttgcaacaaaaaaagtgtttgtattcatttttagacaGTAAATTACATATGTTTTACTT

Function

symbol description
scrn3 Predicted to enable cysteine-type exopeptidase activity and dipeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human SCRN3 (secernin 3).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016805 dipeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4783 Predicted to enable cysteine-type exopeptidase activity and dipeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human SCRN3 (secernin 3).

Ensembl:

ensembl_id ENSDARG00000016611

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073810 False 3320 mRNA 0.39 7 2560219 2573121
TCONS_00073811 False 2397 mRNA 0.44 8 2560540 2572831
TCONS_00073812 False 792 mRNA 0.55 5 2567183 2572790
TCONS_00073813 True 903 lncRNA 0.46 4 2568344 2572791

Neighbor

gene id symbol gene type direction distance location
XLOC_037577 NA coding downstream 2912 2553874 ~ 2557307 (-)
XLOC_037576 NA coding downstream 170411 2382341 ~ 2389808 (-)
XLOC_037575 CU639436.1 coding downstream 222916 2330861 ~ 2337303 (-)
XLOC_037574 BX255915.1 coding downstream 282583 2226463 ~ 2277636 (-)
XLOC_037573 NA coding downstream 352961 2180519 ~ 2207258 (-)
XLOC_037579 sp9 coding upstream 18847 2591968 ~ 2594464 (-)
XLOC_037580 NA coding upstream 204225 2777346 ~ 2780823 (-)
XLOC_037581 NA coding upstream 288100 2861221 ~ 2866454 (-)
XLOC_037582 cdca7a coding upstream 306642 2879763 ~ 2892250 (-)
XLOC_037583 zak coding upstream 322888 2896009 ~ 2945008 (-)
XLOC_037585 NA non-coding upstream 557567 3130688 ~ 3132168 (-)
XLOC_037587 FP236594.1 non-coding upstream 580605 3153726 ~ 3154286 (-)
XLOC_037588 NA non-coding upstream 692447 3265568 ~ 3280451 (-)

Expression


Co-expression Network