XLOC_037582 (cdca7a)


Basic Information

Item Value
gene id XLOC_037582
gene name cdca7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 2879763 ~ 2892250 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073817
AAACTCTGCTGCACAGGATTGGAACACTCGCACATTCACGGAGGACTCGGGCTTAGTGTAAACTCAAACACTCTCAGTAACAACAACCATCTGCAACAATGCGTTCAAAGAAGCAGCAGGCATCCCCTCCGTCCACCAGGATGAACCTGCGGAGCTACAGGAGCTCAACAGTTTTGCCTATGGAAACCTCCTCATCCTCTTCAGATGACAGTTGCGACAGCTTTGGCTCTGATGGATTCGGCAACTCGAAGAGGCCACAGAGGCAGACGAGAAGCTCCACTCAGATGGAGAAAGTGTTTAATGTTCTCCCTGTAACTGAAGAGGAGGATGCCTGCAGCGGGTTCGAGAGCGAACTCAACGACGAGCTGACAGAAATGAAAATGGACTCTGATGCCGAGGCCTGTTCACCGCCCAGGAAAACCCGCAAATCCTTCACTCTCCGAGTCGCCATGAAGTTCCCGACTAAACGCAGCAGTCCATCCAAACCAGTGAAGCCTGAGCCTAAACCTAAAGCCGAGACGAAAGACCCCGAGTCTGACTCAGAGGGAGAAAACTTCATGCTGAAGAGAGCGCTCAACATTAAAGAGAACAAAGCCATGCTTGCTAAACTAATGGCGGAGCTGGATAAAGTTCCTGGACTGTTTCCTGGGAGAGCTGCTCTGACACCAGGCAATGTGGTTCGTCGTGTCCCCCGTCGCTCTCTGGAGCCCATTGCCGCCCGCAGGAGGAACCCTGAGCGCACGTCTCGGCCTCACACACGCTCTCGCTCTCTGGTGGACGGACCTCCATCGCCACCTCCAGAAGACGAAGAGGAGGACAAATACAGCCTGGTGCGCAGAAGCAGAGGTTATGAGGATGACGACGAGGAAGAGAAGGAGCCACGCCGGCGCAGTTATAACAGCTCTCTGACCATTCCTCATGTGGTCAGGCCTGTGGAGGACATCACTGAGGCTGAACTGGAAAACATCTGCATCAACGTCAGAGAGAAGACCTACAACCGGGCCACCGGCTCCACCTGCCATCAGTGCCGCCAGAAAACCACTGACACCAAGACCAACTGCCGCAACTCGGAGTGTGTGGGCGTCCGCGGTCAATTCTGTGGGCCTTGTCTGAGGAACCGTTATGGAGAAGAAGTCCGTGACGCCCTCCTCAACCCGGAGTGGCTGTGTCCGCCATGTCGAGGCATCTGTAACTGTAGTTTCTGTCGTGCCAGAGAGGGCCGCTGTGCTACAGGTGTGCTCGTCTACCTGGCCAAGTATCATGGATATGACAATGTCCACTCTTATCTCAAAAGTCTAAAGAAGGAGCTGGAGGAAAGTGAATAAAGCCATTTATCCATCTGTGGACTCCATCCATAACTGACGTCATTCTCAAGTGCTACATGATCTCCAGAGCTTCATAGACCTGCTGCAGGTTCAGTTTGTGTAGACTGTTAAGTTTGTCTACATGTTCCTTTAATTGacattgttttaaatgtgtaattttttttcttcccttgCAAAATTGGAGCGTTTATCTCTGTACTGTATTGGTTGATCTTTGCTGCAATActtgtttttaatgtgtttttaccGCGTTCTTATTGCTCAGTGGGTTTGCAGACGCTGTTATGACGGCGTGTTTTTACTGCTGTAGAAATGGAATAAAATCGTGACTTTTTAA
>TCONS_00073818
AACGGTTTTGCGGcgtttaaattgtaattaaagtCCACCATTACGCTGAAAAGTTAAATGTCCATTCAGAAATGTTGAGAAGCAGCAGGCATCCCCTCCGTCCACCAGGATGAACCTGCGGAGCTACAGGAGCTCAACAGTTTTGCCTATGGAAACCTCCTCATCCTCTTCAGATGACAGTTGCGACAGCTTTGGCTCTGATGGATTCGGCAACTCGAAGAGGCCACAGAGGCAGACGAGAAGCTCCACTCAGATGGAGAAAGTGTTTAATGTTCTCCCTGTAACTGAAGAGGAGGATGCCTGCAGCGGGTTCGAGAGCGAACTCAACGACGAGCTGACAGAAATGAAAATGGACTCTGATGCCGAGGCCTGTTCACCGCCCAGGAAAACCCGCAAATCCTTCACTCTCCGAGTCGCCATGAAGTTCCCGACTAAACGCAGCAGTCCATCCAAACCAGTGAAGCCTGAGCCTAAACCTAAAGCCGAGACGAAAGACCCCGAGTCTGACTCAGAGGGAGAAAACTTCATGCTGAAGAGAGCGCTCAACATTAAAGAGAACAAAGCCATGCTTGCTAAACTAATGGCGGAGCTGGATAAAGTTCCTGGACTGTTTCCTGGGAGAGCTGCTCTGACACCAGGCAATGTGGTTCGTCGTGTCCCCCGTCGCTCTCTGGAGCCCATTGCCGCCCGCAGGAGGAACCCTGAGCGCACGTCTCGGCCTCACACACGCTCTCGCTCTCTGGTGGACGGACCTCCATCGCCACCTCCAGAAGACGAAGAGGAGGACAAATACAGCCTGGTGCGCAGAAGCAGAGGTTATGAGGATGACGACGAGGAAGAGAAGGAGCCACGCCGGCGCAGTTATAACAGCTCTCTGACCATTCCTCATGTGGTCAGGCCTGTGGAGGACATCACTGAGGCTGAACTGGAAAACATCTGCATCAACGTCAGAGAGAAGACCTACAACCGGGCCAC

Function

symbol description
cdca7a Acts upstream of or within regulation of hematopoietic stem cell differentiation and thymus development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; nervous system; neural tube; thymus; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in immunodeficiency-centromeric instability-facial anomalies syndrome 3. Orthologous to human CDCA7 (cell division cycle associated 7).

GO:

id name namespace
GO:1902036 regulation of hematopoietic stem cell differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0048538 thymus development biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-29 Acts upstream of or within regulation of hematopoietic stem cell differentiation and thymus development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; nervous system; neural tube; thymus; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in immunodeficiency-centromeric instability-facial anomalies syndrome 3. Orthologous to human CDCA7 (cell division cycle associated 7).

Ensembl:

ensembl_id ENSDARG00000077620

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073817 False 1662 mRNA 0.51 10 2879763 2892250
TCONS_00073818 True 975 mRNA 0.53 7 2885296 2892045

Neighbor

gene id symbol gene type direction distance location
XLOC_037581 NA coding downstream 13309 2861221 ~ 2866454 (-)
XLOC_037580 NA coding downstream 98940 2777346 ~ 2780823 (-)
XLOC_037579 sp9 coding downstream 285299 2591968 ~ 2594464 (-)
XLOC_037578 scrn3 coding downstream 306642 2560219 ~ 2573121 (-)
XLOC_037577 NA coding downstream 322456 2553874 ~ 2557307 (-)
XLOC_037583 zak coding upstream 3759 2896009 ~ 2945008 (-)
XLOC_037584 rapgef4 coding upstream 57022 2949272 ~ 3034125 (-)
XLOC_037585 NA coding upstream 238438 3130688 ~ 3132168 (-)
XLOC_037586 pdk1 coding upstream 242812 3135062 ~ 3149896 (-)
XLOC_037587 FP236594.1 coding upstream 261476 3153726 ~ 3154286 (-)
XLOC_037576 NA non-coding downstream 489955 2382341 ~ 2389808 (-)
XLOC_037575 CU639436.1 non-coding downstream 542460 2330861 ~ 2337303 (-)
XLOC_037588 NA non-coding upstream 373318 3265568 ~ 3280451 (-)
XLOC_037589 NA non-coding upstream 466147 3358397 ~ 3395521 (-)
XLOC_037598 FP102171.1 non-coding upstream 1551668 4443918 ~ 4447104 (-)

Expression


Co-expression Network