G1830753


Basic Information

Item Value
gene id G1830753
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 12363291 ~ 12363952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2096816
gccagggtggccggctaacttggcagagtgagcccactgaagaacggccagacgagtaggaacgggaacgaaaagaaggttcctaggacaagcgcgcggcgacggagtgtgagtgagtgcttgctttacctgcctctcaattccccagacagtcaacccgacaacacgcccctcagggagaatcccctcggggtcagtggaggctactgaagaactgaagagacgagataaagcatcaggcttggtgttcttagagcccggacgataagaaatcacgaactcgaaacgagcgaaaaacagcgcccagcgcgcctgacgcgcattaagtcgtttggcagaacggatgtactcaaggttcctatggtcagtccaaacgacaaacggaacggtcgccccctccaaccactgtcgccattcgcctagggctaagcggatggcgagcagttcgcggtttcccacatcatagttaagttccgacggcgacaggcgatgagaaaaatacacgcaagggtggaccttgtcgtcagagagggagcgctgagaaagaatggctcccacgcccacctctgacgcgtcaacctcgacaacgaactgtctagagacgtcaggtgtaacaaggataggtgcggatgtaaaacgattcttgaggagatcaaaagctc

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2096816 True 662 lncRNA 0.55 1 12363291 12363952

Neighbor

gene id symbol gene type direction distance location
LOC110502227 LOC106604178 coding downstream 20169 12285630 ~ 12343122 (-)
LOC110503075 LOC105010677 coding downstream 109044 12219657 ~ 12254247 (-)
LOC110502229 NA coding downstream 157629 12181538 ~ 12205662 (-)
LOC110502230 LOC106604182 coding downstream 187343 12115099 ~ 12175948 (-)
znf511 NA coding downstream 264547 12094868 ~ 12098744 (-)
LOC110502269 LOC106604550 coding upstream 28972 12392924 ~ 12411810 (-)
LOC110502270 LOC106604566 coding upstream 49957 12413909 ~ 12443202 (-)
LOC110502271 LOC106604578 coding upstream 147423 12511375 ~ 12529518 (-)
LOC110502273 LOC106604587 coding upstream 196453 12560405 ~ 12576330 (-)
LOC110502275 LOC106604599 coding upstream 221358 12580816 ~ 12651383 (-)
G1830747 NA non-coding downstream 4503 12357840 ~ 12358788 (-)
G1830746 NA non-coding downstream 6704 12356255 ~ 12356587 (-)
G1830709 NA non-coding downstream 54183 12308452 ~ 12309108 (-)
G1830702 NA non-coding downstream 60041 12302869 ~ 12303250 (-)
G1830676 ap3m1 non-coding downstream 92495 12270191 ~ 12270796 (-)
G1830754 NA non-coding upstream 2073 12366025 ~ 12366227 (-)
G1830844 NA non-coding upstream 43666 12407618 ~ 12407925 (-)
G1830868 NA non-coding upstream 87925 12451877 ~ 12461155 (-)
G1830880 NA non-coding upstream 101792 12465744 ~ 12465962 (-)
G1830891 NA non-coding upstream 109137 12473089 ~ 12473346 (-)
LOC110502234 LOC106604225 other downstream 409658 11907827 ~ 11953940 (-)
LOC118943913 drgx other downstream 560160 11798161 ~ 11807866 (-)
G1829918 NA other downstream 629365 11733430 ~ 11733926 (-)
G1829417 LOC106604325 other downstream 1159295 11203067 ~ 11203996 (-)
G1827761 NA other downstream 2674447 9688457 ~ 9688844 (-)
G1833570 NA other upstream 2156397 14520349 ~ 14520929 (-)
G1834810 NA other upstream 2802257 15166209 ~ 15166919 (-)
G1834927 NA other upstream 3134802 15498754 ~ 15500261 (-)

Expression


Co-expression Network