G1832348 (LOC106604759)


Basic Information

Item Value
gene id G1832348
gene name LOC106604759
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 13174191 ~ 13178346 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2098576
TTCATTGGAGGATATTGCTTTAGGAAAGAATATAATGTGTTTCTTGATTTGATTAGAAAAACACTTTTTATGATGATTTGCAGGATAGTTGTGAATAGACACACAAGCATATTCAGATGTTTGATTATAGTCAACATTTCTCAACAACGCTGAATGATTGGTTGACACTGCTCATTCTTGGCAGGGTGTTTGCTTGTTTTCTAGAACAACATGCCCATTAATCGTGTATTCAAGGGACCTCCAGTTAAGTACATTCCCAGGGGTGAAATTTAAGTCGCTTGTGAAGCGCTGGATCTCACAAGGTGACAGAACATAATTCCACATGTGCACATCAGTGAGTTGACCAATAAACGATTGTCCTTTATCAAAATGTCCACCATAAGAATCCTGGTCCTGACCTAGGATTATGATGGGTTTTCCATTCAGCACACTCCCAGCAGTGTATCCTATCTTCCTTGCACTTGGCTTCCCATTGATCCAAACCTGACTGAGTCCGGTGACTGAGTCCCAGCTCCCACACAGAGCCATCCACATGTTCTGCTCATCTGGTAGCCCTGTGAATGTATTTCCCACATATCTAACTTGTAGCTCCATGTCACCATTGGACTCTTTGAACAACAGAAAGTCATTGGTGCTTGTCGGAGTTGCCATGGAAAAGATGGAAAACGCCCTCTTGACATCTGTGAAATACCTGAGACATACTGTCACAGAAGGATAGTTTTCTCCCTTTGGTATTAGCCCCACATGATCAGAGTCGGACTCCTTTGGAAATGTGAACATTTTACCTGAGAGGTCTTGAGGCACAGCCCAGCACATTGTAAACAGAACATGCACAAGAAAGAGTCTCTCCATCTTGTCGGTTTTGTAAAAAAACTGATTTATCTTAGGGGATTCGTTCTCCTGTTGTTTAAATGCTCATCTTCAGTCTTTGTGAAATAGGTTAGTTATGCAAGCGAGTCGGTTATAATGTAAAAGGCCCCTGGCTGCCAGGAATTACATTTAGCAAGTTATGCActttcacacaaaaaaaagggTGATTTGAGAAAAAAATCATGGTCAACATATTGTTTTCTGACCGCATGACTGTTAGTCATGCGACAGTAGGGGTTGTGAAAGTGTTAACACAGCATTCTAATGTATCTGCAATTGTATGGTGGTATTTTTAGGACTTTCTGTTCCTCTTTTCAATCAGCTGACAATTTTTCTATCAATTTCAACGAGTCAATTTCCCTTGACTTCAGGGTCAAAACCTGATGGATCAGGTTTTtgacaaaataataaaat

Function

NR:

description
serum amyloid P-component-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2098576 True 1284 lncRNA 0.40 4 13174191 13178346

Neighbor

gene id symbol gene type direction distance location
LOC110502288 abhd12 coding downstream 6312 13148827 ~ 13167879 (-)
LOC110502284 tm9s3 coding downstream 27841 13123422 ~ 13146350 (-)
sfxn4 sfxn4 coding downstream 58161 13099167 ~ 13116030 (-)
LOC110502281 eif3a coding downstream 90121 13067835 ~ 13084070 (-)
LOC110502279 emx2 coding downstream 124705 13044356 ~ 13049486 (-)
fignl1 fignl1 coding upstream 173000 13351346 ~ 13361102 (-)
LOC110502296 nanp coding upstream 225201 13403547 ~ 13405114 (-)
LOC110502298 LOC106604820 coding upstream 309748 13488094 ~ 13549306 (-)
LOC110502303 LOC106604861 coding upstream 496117 13674463 ~ 13710049 (-)
LOC118943841 NA coding upstream 524197 13702543 ~ 13703759 (-)
G1832329 NA non-coding downstream 108049 13065910 ~ 13066142 (-)
G1831475 LOC101154678 non-coding downstream 195965 12978002 ~ 12978226 (-)
G1831444 NA non-coding downstream 216000 12957980 ~ 12958191 (-)
G1831388 NA non-coding downstream 266203 12907782 ~ 12907988 (-)
G1831340 NA non-coding downstream 353426 12820468 ~ 12820765 (-)
G1832362 NA non-coding upstream 4870 13183216 ~ 13183839 (-)
G1832384 NA non-coding upstream 51675 13230021 ~ 13239763 (-)
G1832439 ikaros non-coding upstream 161216 13339562 ~ 13342191 (-)
G1832472 NA non-coding upstream 203042 13381388 ~ 13381633 (-)
G1832473 NA non-coding upstream 203372 13381718 ~ 13381920 (-)
LOC110502275 LOC106604599 other downstream 584491 12580816 ~ 12651383 (-)
LOC110502269 LOC106604550 other downstream 778544 12392924 ~ 12411810 (-)
LOC110502234 LOC106604225 other downstream 1220558 11907827 ~ 11953940 (-)
LOC118943913 drgx other downstream 1371060 11798161 ~ 11807866 (-)
G1829918 NA other downstream 1440265 11733430 ~ 11733926 (-)
G1833570 NA other upstream 1342003 14520349 ~ 14520929 (-)
G1834810 NA other upstream 1987863 15166209 ~ 15166919 (-)
G1834927 NA other upstream 2320408 15498754 ~ 15500261 (-)
tmem254 cj057 other upstream 2487857 15666203 ~ 15671223 (-)
G1835092 NA other upstream 2567292 15745638 ~ 15747735 (-)

Expression


Co-expression Network