G1832439 (ikaros)



Basic Information


Item Value
gene id G1832439
gene name ikaros
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 13339562 ~ 13342191 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU2098675
GTGTATGTAAAATATCCTTTATTGATATTTTGCAAGCATGATATATGGGTGAAAAGACTTTAAAAGTTTAGTCCAAATTGAGAGTCACATTTTCTTTGCCACCGAGGTAAAAAGCTGGGACAAAATCGAATCCCATCCGTACATTATATCAAACAAACATCTTTCAGTAAAAACACTCTAGTTCGGTCATTTATTCAACTCAAATTAATGTATCACATTTGATTAATGGTAGGGAATGTTTGAACTAAATAAATCAAACGGGAAACCCTAACACCAACTGTaataaattacaaaaaaaaaacacggcataaataatatataaaaagtccatataaaaaaaacatttaagtaAAATAAGGAGCTAAATTTCCTTGGGTGGAATTCAAAAAGGTTATTACAGTGACGAATAACACTGTAAAGTTATAACTTAAATGTCAAGCAATACCTTGTATTCTTTAGAATAAAATATACAGATATTCCTGTCTAGGTAGGCTATCAGAAAAACAGACATGTATTTAATGTACACAGACATCAAAGGGTAGATGAATGACTTAAAACTATACAGTATGTGACACATGATACTTACTGCTGAGGCACAATGATTTTTTTAAGTTGTTTGTTCAGTTATTTGAACACCTTTTTGTTTTCTAAAAAAGCAGATCAAGGAATAGTTTTTTTTTCCTCCTGAACATGtgaaatacacattaattagatttgTTCTTCAACATGCAATTTCTTGACAATGTATaaaaatcgtgtgtgtgtgtttagtacaTGTGTATGTATGTTCATGAGTAAGTGTGTGTTCAGTTGGCAACTCAGTAGCGATGCTCCCCTCGGGTCATGTGTGACGAAAACTCGTAACGGTCCTGACTGCGATGGCCACAGAGGTTGCACTCGAAGGGGTCTCGGAAGCCATGGCAGCCCATGTGGATGGTGTACATCACATGGTCTAGGAAGAGGATGCGGCAGTGTTCACAGCGATATGCCCTCAcctgctccccctctccactcagcACCTTGAACCCCTCCGAGGCAATCTCGATACTGGCCCGCATGGCCTCGTACTGCCGCTGCTGCTCCTCCTTCACCAGGGGCAGCACGCCATTACGTACCCCGGACGTGATGTGGTTTGTCAGGTAGATGAGGCCTGAGGCCCCGACACCTGCCTTCTCTTCATTGTTGCTCTCCGTGTCGGTGGAATCCTGGCCACTGTGGCTGGGGGAGCCGTCCTTCTCGCTGGAGGCTGACTTGGACTTTGCGAGCAACAGAAGATTTTCGGCTGCGCTGTCCTTGGCTGACAGGCCGTGGCCCTCTGCAGGGGGCTTGTGGAGGGGGTACATGGAGCCCATGACCCCCATGTCAGAGGAGGTTGGGGATGTCTGGATGAGCGGTCGGAGTGACTCGGCACCCAGGTAGTTGATGGCACTGTTGATGGCCTGGTCGATGACATGAGGCTGCATCAGTTCCCCCGGGCCACCCTCGAAGGAGATGTTGGAGAAGCGTTTCTCACCTACAAACTTCTGTGGCATAGTGCTCTTACGTTTGGCTACATTATTAGCTAGTCTGTCTAGCACCAAGGCTCTCTTAGATCCCATCTGGCTTAAGTCTTCCCTCTGCTCATTCTGGTTGCTTTCTTCCTTTACTACTGGAAAGCAAGACAGAAAAGTAGGTTTCAGAATCAAAGTAGTGAAATCTGACCTGATAAAAAGTATAATTACTGTATAACAGGATCTTGTTACAATTTGCTAAAGCATCCCTCCCTGACTGTAGATACATGGAACAATGATGAGGAGGCCTTTATTGACAGATGTGCTGCAGTTGGTATACATTGGCCTTACTCACTAAGCAAAGCAGAGTGATCAGCCTTTCTCATCATTTCCTCTTCTTAACCTCTGCACTCTTGCCCCACTTCCTAATGTTGTCAGTTCAGTAGGCTACATGTACATCCGCCCACAATGGATCTCTCCTTTGTATAAAGAGGTCATTTTTTACGTGAGCTACATTATCTTACTATAAAAAGCTACATTATCTTACTATAAAAAGCTACATTATCT

Function


NR:

description
DNA-binding protein Ikaros isoform X4

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU2098675 True 2057 lncRNA 0.43 2 13339562 13342191

Neighbor


gene id symbol gene type direction distance location
mocos LOC106604730 coding downstream 142369 13169146 ~ 13197193 (-)
LOC110502288 abhd12 coding downstream 171683 13148827 ~ 13167879 (-)
LOC110502284 tm9s3 coding downstream 193212 13123422 ~ 13146350 (-)
sfxn4 sfxn4 coding downstream 223532 13099167 ~ 13116030 (-)
LOC110502281 eif3a coding downstream 255492 13067835 ~ 13084070 (-)
fignl1 fignl1 coding upstream 9155 13351346 ~ 13361102 (-)
LOC110502296 nanp coding upstream 61356 13403547 ~ 13405114 (-)
LOC110502298 LOC106604820 coding upstream 145903 13488094 ~ 13549306 (-)
LOC110502303 LOC106604861 coding upstream 332272 13674463 ~ 13710049 (-)
LOC118943841 NA coding upstream 360352 13702543 ~ 13703759 (-)
G1832384 NA non-coding downstream 99799 13230021 ~ 13239763 (-)
G1832362 NA non-coding downstream 155723 13183216 ~ 13183839 (-)
G1832348 LOC106604759 non-coding downstream 161216 13174191 ~ 13178346 (-)
G1832329 NA non-coding downstream 273420 13065910 ~ 13066142 (-)
G1831475 LOC101154678 non-coding downstream 361336 12978002 ~ 12978226 (-)
G1832472 NA non-coding upstream 39197 13381388 ~ 13381633 (-)
G1832473 NA non-coding upstream 39527 13381718 ~ 13381920 (-)
G1832480 NA non-coding upstream 46820 13389011 ~ 13389298 (-)
G1832482 NA non-coding upstream 49449 13391640 ~ 13395954 (-)
G1832483 NA non-coding upstream 54611 13396802 ~ 13397308 (-)
LOC110502275 LOC106604599 other downstream 749862 12580816 ~ 12651383 (-)
LOC110502269 LOC106604550 other downstream 943915 12392924 ~ 12411810 (-)
LOC110502234 LOC106604225 other downstream 1385929 11907827 ~ 11953940 (-)
LOC118943913 drgx other downstream 1536431 11798161 ~ 11807866 (-)
G1829918 NA other downstream 1605636 11733430 ~ 11733926 (-)
G1833570 NA other upstream 1178158 14520349 ~ 14520929 (-)
G1834810 NA other upstream 1824018 15166209 ~ 15166919 (-)
G1834927 NA other upstream 2156563 15498754 ~ 15500261 (-)
tmem254 cj057 other upstream 2324012 15666203 ~ 15671223 (-)
G1835092 NA other upstream 2403447 15745638 ~ 15747735 (-)

Expression



Co-expression Network