G1832558


Basic Information

Item Value
gene id G1832558
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 13672516 ~ 13685923 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2098799
atttttcagtttttaatttgttaaaaaagtttgaaatatccaataaatgtcattccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtaagtggctTTTTTTGTGGGTGTGTTGAATCAAACATAAATACAGTAAATAATGTTCGAGGCCAGTACATTAAAACCACAGTATTTTTTTGTTATCAAGGATATGAGCAAAAATAAGTTACTCTGgtcttttttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttggaccttgtcagctcaggggtttgaacttgcaaccttccggttactcaaccaacgctcgaaccactaggctaccctgccactcaTCTTAATGCTGTGCCATGATCACAATGTTACTGCCCAACAATACAACTGTAGTAGGCATGCCTGCATGACCCGTGTTGACAAATAATTATTTATCATTAAAGTTATAAACATTGTTAATACAA
>TU2098800
ctttcgcaaggcactgtattggctTTTTTTGTGGGTGTGTTGAATCAAACATAAATACAGTAAATAATGTTCGAGGCCAGTACATTAAAACCACAGTATTTTTTTGTTATCAAGGATATGAGCAAAAATAAGTTACTCTGgtcttttttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttggaccttgtcagctcaggggtttgaacttgcaaccttccggttactcaaccaacgctcgaaccactaggctaccctgccactcaTCTTAATGCTGTGCCATGATCACAATGTTACTGCCCAACAATACAACTGTAGTAGGCATGCCTGCATGACCCGTGTTGACAAATAATTATTTATCATTAAAGTTATAAACATTGTTAATACAA

Function

NR:

description
PREDICTED: oligosaccharyltransferase complex subunit ostc isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2098799 False 627 lncRNA 0.37 2 13672516 13679578
TU2098800 True 454 lncRNA 0.39 2 13672516 13685923

Neighbor

gene id symbol gene type direction distance location
LOC110502298 LOC106604820 coding downstream 123210 13488094 ~ 13549306 (-)
LOC110502296 nanp coding downstream 267402 13403547 ~ 13405114 (-)
fignl1 fignl1 coding downstream 311414 13351346 ~ 13361102 (-)
mocos LOC106604730 coding downstream 475323 13169146 ~ 13197193 (-)
LOC110502288 abhd12 coding downstream 504637 13148827 ~ 13167879 (-)
LOC118943841 NA coding upstream 16620 13702543 ~ 13703759 (-)
LOC110502305 marh5 coding upstream 73730 13759653 ~ 13824191 (-)
LOC110502306 LOC106604898 coding upstream 205075 13890998 ~ 13944830 (-)
LOC110502308 blnk coding upstream 281591 13967514 ~ 14061826 (-)
LOC110502312 kndc1 coding upstream 690313 14376236 ~ 14467063 (-)
G1832590 NA non-coding downstream 112127 13560090 ~ 13560389 (-)
G1832483 NA non-coding downstream 275208 13396802 ~ 13397308 (-)
G1832482 NA non-coding downstream 276562 13391640 ~ 13395954 (-)
G1832480 NA non-coding downstream 283218 13389011 ~ 13389298 (-)
G1832473 NA non-coding downstream 290596 13381718 ~ 13381920 (-)
G1832769 NA non-coding upstream 189755 13875678 ~ 13877676 (-)
G1832798 NA non-coding upstream 268475 13954398 ~ 13954643 (-)
G1832918 NA non-coding upstream 437415 14123338 ~ 14126003 (-)
G1833001 NA non-coding upstream 562849 14248772 ~ 14249114 (-)
LOC110502275 LOC106604599 other downstream 1082816 12580816 ~ 12651383 (-)
LOC110502269 LOC106604550 other downstream 1276869 12392924 ~ 12411810 (-)
LOC110502234 LOC106604225 other downstream 1718883 11907827 ~ 11953940 (-)
LOC118943913 drgx other downstream 1869385 11798161 ~ 11807866 (-)
G1829918 NA other downstream 1938590 11733430 ~ 11733926 (-)
G1833570 NA other upstream 834426 14520349 ~ 14520929 (-)
G1834810 NA other upstream 1480286 15166209 ~ 15166919 (-)
G1834927 NA other upstream 1812831 15498754 ~ 15500261 (-)
tmem254 cj057 other upstream 1980280 15666203 ~ 15671223 (-)
G1835092 NA other upstream 2059715 15745638 ~ 15747735 (-)

Expression


Co-expression Network