G1832769


Basic Information

Item Value
gene id G1832769
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 13875678 ~ 13877676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2099031
gagagagactgcatgcAGCAGTCTTCAGAAACGACCGCGACAGCCAGAGGCCACAGTCAGGGAAAGGAACAGCGTGTTCTGTCCCGGAGCAAGAGTGtgtaaaatagagagagagaaagagcgcgaGAAAGAGCGACAGACAAAGAGCGACACAAagggagcgacagagagagagcgacacaaagggagagagagcgcgcaagcgacagagagaaagagaatggtgTGTGTATGGAGGAGAAAAATAGAGGAAGAGACGTTGGGGAAGGAAAATAGTGGGTTGGACGGTTGACTGGTAGCGTTAGGGGTTACACAGTTGAGGGAAGGGGCTAGCCTAGCCGAGCCGCTAAACGAAGGAGGCAGTTCTTGGCTTTCACAATTTACAGCGCCAAGAGAGGGGTGCGGACTTCGACTCTGCAGACTGGTCTGGCCCGTAtttataaagcatctcagagtaagaGTTCTGATCTAGGAGCAGGTCCCCACTGTCTTATTTAGTACGCTCTGAAAGGCAAAACGGATCCTAGAGCTGGACCGACTGAGAACCTTTATGGATATGGGCCAGCGAGTCCCATCTGTGAAGGGTGGAGAGCAGACTCTGGCAAAGCTCCCTCACAGCTCATCATCAAAATCCTCACATAGAAAGCGGTCTCAATTGTCTCAACTGACCATGTCTGATACGTACAGCATATCCTAAAAACAGAAAGAAGGGGGAAGGACATGGAAGAGAAGAGAAACAGAAGCCAAGCTGCCCTAGCActgcctagtgaaagtctacacaacCCTTACAATCTTCAGTTTCCTTAAATTCTACCTAAAAAAAAGGGACTAAATTAAGATTTTCTCCTACCAATCTACACaacctattccacattttgaaAGTGAAAGTGTCTTCTTGAAAAACATTTtgaataacaaacaaaaaaaagtgtacCTTCTCAGATAAGTGATCATATTTGATGCAAACAAGATATTAATGTGctgatacagtgcctttagaaagtattcacacccctttttttccattttttgttgttgtgttacagtctgaacttaaaattgattaaattgccccccaaaaaattgtcgcttgcc
>TU2099032
gagagagactgcatgcAGCAGTCTTCAGAAACGACCGCGACAGCCAGAGGCCACAGTCAGGGAAAGGAACAGCGTGTTCTGTCCCGGAGCAAGAGTGtgtaaaatagagagagagaaagagcgccagagagagagcgacacaaagggagagagagcgcgcaagcgacagagagaaagagaatggtgTGTGTATGGAGGAGAAAAATAGAGGAAGAGACGTTGGGGAAGGAAAATAGTGGGTTGGACGGTTGACTGGTAGCGTTAGGGGTTACACAGTTGAGGGAAGGGGCTAGCCTAGCCGAGCCGCTAAACGAAGGAGGCAGTTCTTGGCTTTCACAATTTACAGCGCCAAGAGAGGGGTGCGGACTTCGACTCTGCAGACTGGTCTGGCCCGTAtttataaagcatctcagagtaagaGTTCTGATCTAGGAGCAGGTCCCCACTGTCTTATTTAGTACGCTCTGAAAGGCAAAACGGATCCTAGAGCTGGACCGACTGAGAACCTTTATGGATATGGGCCAGCGAGTCCCATCTGTGAAGGGTGGAGAGCAGACTCTGGCAAAGCTCCCTCACAGCTCATCATCAAAATCCTCACATAGAAAGCGGTCTCAATTGTCTCAACTGACCATGTCTGATACGTACAGCATATCCTAAAAACAGAAAGAAGGGGGAAGGACATGGAAGAGAAGAGAAACAGAAGCCAAGCTGCCCTAGCActgcctagtgaaagtctacacaacCCTTACAATCTTCAGTTTCCTTAAATTCTACCTAAAAAAAAGGGACTAAATTAAGATTTTCTCCTACCAATCTACACaacctattccacattttgaaAGTGAAAGTGTCTTCTTGAAAAACATTTtgaataacaaacaaaaaaaagtgtacCTTCTCAGATAAGTGATCATATTTGATGCAAACAAGATATTAATGTGctgatacagtgcctttagaaagtattcacacccctttttttccattttttgttgttgtgttacagtctgaacttaaaattgattaaattgccccccaaaaaattgtcgcttgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2099031 False 1095 lncRNA 0.45 2 13875678 13877676
TU2099032 True 1055 lncRNA 0.45 3 13875678 13877676

Neighbor

gene id symbol gene type direction distance location
LOC110502305 marh5 coding downstream 51487 13759653 ~ 13824191 (-)
LOC110502303 LOC106604861 coding downstream 165629 13674463 ~ 13710049 (-)
LOC118943841 NA coding downstream 171919 13702543 ~ 13703759 (-)
LOC110502298 LOC106604820 coding downstream 326372 13488094 ~ 13549306 (-)
LOC110502296 nanp coding downstream 470564 13403547 ~ 13405114 (-)
LOC110502306 LOC106604898 coding upstream 13322 13890998 ~ 13944830 (-)
LOC110502308 blnk coding upstream 89838 13967514 ~ 14061826 (-)
LOC110502312 kndc1 coding upstream 498560 14376236 ~ 14467063 (-)
LOC110502313 LOC106604940 coding upstream 619326 14497002 ~ 14757755 (-)
LOC118943949 NA coding upstream 651582 14529258 ~ 14529355 (-)
G1832558 NA non-coding downstream 189755 13672516 ~ 13685923 (-)
G1832590 NA non-coding downstream 315289 13560090 ~ 13560389 (-)
G1832483 NA non-coding downstream 478370 13396802 ~ 13397308 (-)
G1832482 NA non-coding downstream 479724 13391640 ~ 13395954 (-)
G1832480 NA non-coding downstream 486380 13389011 ~ 13389298 (-)
G1832798 NA non-coding upstream 76722 13954398 ~ 13954643 (-)
G1832918 NA non-coding upstream 245662 14123338 ~ 14126003 (-)
G1833001 NA non-coding upstream 371096 14248772 ~ 14249114 (-)
G1833412 NA non-coding upstream 408011 14285687 ~ 14338025 (-)
LOC110502275 LOC106604599 other downstream 1285978 12580816 ~ 12651383 (-)
LOC110502269 LOC106604550 other downstream 1480031 12392924 ~ 12411810 (-)
LOC110502234 LOC106604225 other downstream 1922045 11907827 ~ 11953940 (-)
LOC118943913 drgx other downstream 2072547 11798161 ~ 11807866 (-)
G1829918 NA other downstream 2141752 11733430 ~ 11733926 (-)
G1833570 NA other upstream 642673 14520349 ~ 14520929 (-)
G1834810 NA other upstream 1288533 15166209 ~ 15166919 (-)
G1834927 NA other upstream 1621078 15498754 ~ 15500261 (-)
tmem254 cj057 other upstream 1788527 15666203 ~ 15671223 (-)
G1835092 NA other upstream 1867962 15745638 ~ 15747735 (-)

Expression


Co-expression Network