G1835093 (LOC106605092)


Basic Information

Item Value
gene id G1835093
gene name LOC106605092
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 15740983 ~ 15744099 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2101550
tgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatatatatattttttaatcaaaataTTTACCAATGAACATTAGAGAGCAAGCTCGGAGCTCACGCGTCATCCCCTGTTCTTCATCATTCATTTTTCCTCCTCGCCCTCATTTAAAGGGCTACATGAATGGGAAGTGCTGCTGGAGTATTCCATGCGCCAGGCTCAAGAGTTCAaagtagatttaaaaaaaagaccctAAAACGTATGGATTCAAACAGGAGGCTCTAATGAAAAGGCATAGGTTACGCTTTGTTGTATTTGTCCTCCTGATGCCAGTTCTCGCAATATGCTGGGTTATTATAGGACATGGCTAGCAGTGACAATGCGAAGCAGGCCCTTTCCTGGCCATTATGCCGCCCTAGATGAGACCAAAAAAAATTGCCGCCCTCCCTTACAATGTTGGCCCGCAACGGAATTTTATGAATGTCCATCCATGTGGCTGGCCTACCGTTTGTAAAACAGGCAGTTGCCTTGGCAttattagtcctgattcctgtgactaatcaTTTGGGCTATTTAAGCTCTGAATAAGCTACCCCAACATCATCAGGAGTTATCCTCAGCCTATTTACAAGGAGAATCCATGTGTTCACACAGCTGGAAATGCAGAAGTCTTTATTTTCCCGCTATGATGCAGCTcgtgaaaaaaaaaaattgacgAATACAAACTTGAAAATCGCTGATTATCATGTTAATTTAGCCTAAGGGGTGAAACTCCCTGAACATTAGCTGTGAGTAGCCTGATTTTCCTTTCCAGATAttgtccatttgactttgacttGCCCCGTTTTTGTAAATGTTGTTCGTTAACATGTCGACGAGCGTTTTTAGGTTTGGCTATTTGATCGCAAAAACCTGCATAAGGTAAAGTGTCCGTCTCACGACATTGACATACATTTTATCtccagcatggaggctacagcaAACACCACTTTCTACGGTAGGCTACATGATTTATGTTGGATAATTTTTTGACTGAacattggtggagtactgcaccGGTGAAGCGCGCTGGGCATGGACAATATTTTGCACCCCCTGCCTTTGATAAACTGGGTAGGCCTACTGCTTATCACTGGGTGGCATCAGCGCATACCTAAATAGCCCATACGCCACTGGGTGAgagaaattgtcattgtttttggGTAGAATTATGTATGAGTATGTTGTTTGAGTAACGTCTTGGTCAGTTTAGTTAGGTCAAGCTGGGTGTACACTACACGATTTTGGCCACAATTTAGCTGTCCCAGACAGGTTTTTGAAACTGAAGACAAAATCCCCATGCCGTTGCCTACTTGGGCCGCACGGCTGTCGCcgacatgtagtaaccaaatctaaatacattttatacttgcgattcttcaaagtagccaccctttgccctgataACATATTTACACACTCCTGGCATTCACTCTACCATTGGGCTCAATCGTTGACCTAACAATGGGCCTGAATTATAACAAGTTAACCCTGAGTATGGCACAGTGTGACACCATGAAGGCAGAACGCAGGACCAGAAACAAACCAGACCAAGTTAAAGTGCCTGCTCTGTTGCCAGTTTGAGCCACTGACAGACGTGAGAAAACAACCAGGACAAATATCGTTAGTATTGTTCCATTATAAGAGCCGCACTTCTGTGGCAACACAGTAGCGATGGGAGACAATGATTCATGCTTAGAGAAATCACAGTGAGGATATCAAAAAGCCCAGGAGTCGCTGTAACCACACCCACTCCTGTGTATGCCCTGCTCCctataggtgtacagaggcagGATGTAGCAGCAGCACCCTTGGACGTGGccttggaccccccccccccctcccaggagAGCGATGATTAACATTACACCTGAGGCCTAACAATGCCCGCCAGGCAGTATAGTCACTTGATCAAGAAAATGGAAAAGGAAAGATAGAAAGCACGAGTGAACTGTACAACATTGCTAGCTAACCATGTGGGCCTAGATAGAGACTGGGGGGGGTGAGAGGGCATGCAGGCAGCTCATGCTGTGGGATCAGGCAGACACTTGACAGAATTAAAAAGGTGAGAGGGACACAAAGCATGAAGGCTTGTGCTCTCCCTTTCAGAACCTGTTCAAcattaaaaaccatgtgtgcttgCCAGACAGCATTGTACTGAATATAATGATACATATGTATCCCAAGTGATGTAAATGATAACTAAAACAATAATGAGATTAGAATGAATCTTGGATAGCTCACTTCACCTAACTCCTTGTTTCTCCAGTTACCCCTCCTTGCCTGACTGAGTAGTGCTTTGTTCATTCAGTATGGCCTCTCCTGATTGGCAGGGATTTTTCTGTTTCAACTCCGTCCGCGGCGCACAGGCCGCCAGATACCgctcccctatttgaccttgaGTGGCGGCTCCCTCTCCAGCCAGCGCACACGCACTTTCTGTTTGTAGTGATACTCCTTGAGGAAGTCCTGCAGGGCCGGGGGCAGCGGCAGGGCGCCGATGCCGTCGTATGTGGTCCGGCGGCAGATGGCGGCGCGGGCCAGGTGCTGCAAGCCGGAGGGGAAGGTCCGGTGGAGAGGTGCCGTGAGCAGCGGCTCAAAGAACATGCAGGCGCTGGGGTCCTTGTAGTGCTCCAGTAGCCCCGTGACGGTGGATGAGTGGAACACGCAGGGGTCGTGGGCGTCGAAGCTGAAGTTGTGGTTCCACTGCTCGATGCGGGCGTGCAGCGATCGGTTGTAGCGACGGAAGCTGACCGAGAACAGGTAATCCTCCTGGGCCGAGTCGCGCAACAGGAAGGTGCCCTCAGGCCGGCCATCCAGCAGAGCCTCTGCCTCGTAGCGGTCCATCACGCCCCAGTAGCAGGGCAGCGCAGTGATCTGAAGCAGGTCCGGCACCAGGCAGTGGATGTAGTCGATCTGGGTGTGCACCTTCCAGGGCCCAGGCTGGTTCCGGCTCAGATGGCCATCCCCGGACGTGTGGCGTAGCTTAGGCCTCAGGGCCTGCAGGCAAAGGGTGGTGGAGTCCTCCTCCGAGTCGCAGTCAGCCAGCTGGGCTGTAGCCCCTCCGAGCACCTGT
>TU2101551
tgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatatatatattttttaatcaaaataTTTACCAATGAACATTAGAGAGCAAGCTCGGAGCTCACGCGTCATCCCCTGTTCTTCATCATTCATTTTTCCTCCTCGCCCTCATTTAAAGGGCTACATGAATGGGAAGTGCTGCTGGAGTATTCCATGCGCCAGGCTCAAGAGTTCAaagtagatttaaaaaaaagaccctAAAACGTATGGATTCAAACAGGAGGCTCTAATGAAAAGGCATAGGTTACGCTTTGTTGTATTTGTCCTCCTGATGCCAGTTCTCGCAATATGCTGGGTTATTATAGGACATGGCTAGCAGTGACAATGCGAAGCAGGCCCTTTCCTGGCCATTATGCCGCCCTAGATGAGACCAAAAAAAATTGCCGCCCTCCCTTACAATGTTGGCCCGCAACGGAATTTTATGAATGTCCATCCATGTGGCTGGCCTACCGTTTGTAAAACAGGCAGTTGCCTTGGCAttattagtcctgattcctgtgactaatcaTTTGGGCTATTTAAGCTCTGAATAAGCTACCCCAACATCATCAGGAGTTATCCTCAGCCTATTTACAAGGAGAATCCATGTGTTCACACAGCTGGAAATGCAGAAGTCTTTATTTTCCCGCTATGATGCAGCTcgtgaaaaaaaaaaattgacgAATACAAACTTGAAAATCGCTGATTATCATGTTAATTTAGCCTAAGGGGTGAAACTCCCTGAACATTAGCTGTGAGTAGCCTGATTTTCCTTTCCAGATAttgtccatttgactttgacttGCCCCGTTTTTGTAAATGTTGTTCGTTAACATGTCGACGAGCGTTTTTAGGTTTGGCTATTTGATCGCAAAAACCTGCATAAGGTAAAGTGTCCGTCTCACGACATTGACATACATTTTATCtccagcatggaggctacagcaAACACCACTTTCTACGGTAGGCTACATGATTTATGTTGGATAATTTTTTGACTGAacattggtggagtactgcaccGGTGAAGCGCGCTGGGCATGGACAATATTTTGCACCCCCTGCCTTTGATAAACTGGGTAGGCCTACTGCTTATCACTGGGTGGCATCAGCGCATACCTAAATAGCCCATACGCCACTGGGTGAgagaaattgtcattgtttttggGTAGAATTATGTATGAGTATGTTGTTTGAGTAACGTCTTGGTCAGTTTAGTTAGGTCAAGCTGGGTGTACACTACACGATTTTGGCCACAATTTAGCTGTCCCAGACAGGTTTTTGAAACTGAAGACAAAATCCCCATGCCGTTGCCTACTTGGGCCGCACGGCTGTCGCcgacatgtagtaaccaaatctaaatacattttatacttgcgattcttcaaagtagccaccctttgccctgataACATATTTACACACTCCTGGCATTCACTCTACCATTGGGCTCAATCGTTGACCTAACAATGGGCCTGAATTATAACAAGTTAACCCTGAGTATGGCACAGTGTGACACCATGAAGGCAGAACGCAGGACCAGAAACAAACCAGACCAAGTTAAAGTGCCTGCTCTGTTGCCAGTTTGAGCCACTGACAGACGTGAGAAAACAACCAGGACAAATATCGTTAGTATTGTTCCATTATAAGAGCCGCACTTCTGTGGCAACACAGTAGCGATGGGAGACAATGATTCATGCTTAGAGAAATCACAGTGAGGATATCAAAAAGCCCAGGAGTCGCTGTAACCACACCCACTCCTGTGTATGCCCTGCTCCctataggtgtacagaggcagGATGTAGCAGCAGCACCCTTGGACGTGGcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2101550 False 3117 lncRNA 0.49 1 15740983 15744099
TU2101551 True 1864 lncRNA 0.44 1 15742236 15744099

Neighbor

gene id symbol gene type direction distance location
LOC110502330 LOC106605086 coding downstream 35564 15702242 ~ 15705419 (-)
tmem254 cj057 coding downstream 69760 15666203 ~ 15671223 (-)
LOC110502324 LOC106605068 coding downstream 94735 15633647 ~ 15646248 (-)
LOC118943902 NA coding downstream 204919 15534830 ~ 15536064 (-)
pwwp2b pwwp2b coding downstream 214461 15518820 ~ 15526522 (-)
LOC110502332 mcfd2 coding upstream 55271 15799370 ~ 15804977 (-)
LOC110502333 LOC102778633 coding upstream 120972 15865071 ~ 15869051 (-)
trnai-uau-47 NA coding upstream 631781 16375880 ~ 16375973 (-)
LOC118943947 NA coding upstream 902281 16646380 ~ 16646432 (-)
LOC110502345 eml4 coding upstream 929310 16673409 ~ 16764042 (-)
G1835042 NA non-coding downstream 44403 15693307 ~ 15696580 (-)
G1834944 NA non-coding downstream 211473 15529285 ~ 15529510 (-)
LOC110502321 NA non-coding downstream 242706 15494874 ~ 15498318 (-)
LOC110502317 LOC106605012 non-coding downstream 497500 15237632 ~ 15429967 (-)
G1834799 NA non-coding downstream 576998 15161796 ~ 15163985 (-)
G1835094 NA non-coding upstream 128 15744227 ~ 15745282 (-)
G1835092 NA non-coding upstream 1539 15745638 ~ 15747735 (-)
G1835016 NA non-coding upstream 6976 15751075 ~ 15752563 (-)
G1835096 NA non-coding upstream 11463 15755562 ~ 15755761 (-)
G1835102 NA non-coding upstream 22138 15766237 ~ 15766503 (-)
G1834927 NA other downstream 240722 15498754 ~ 15500261 (-)
G1834810 NA other downstream 574064 15166209 ~ 15166919 (-)
G1833570 NA other downstream 1220054 14520349 ~ 14520929 (-)
LOC110502275 LOC106604599 other downstream 3151283 12580816 ~ 12651383 (-)
LOC110502353 LOC106605805 other upstream 1679376 17420323 ~ 17425430 (-)
G1837980 NA other upstream 1965673 17709772 ~ 17719204 (-)
LOC110502361 LOC106605890 other upstream 1981164 17725263 ~ 17781515 (-)
LOC110502394 LOC106606249 other upstream 3105598 18849389 ~ 18854222 (-)

Expression


Co-expression Network