XLOC_037605 (ACVR1C)


Basic Information

Item Value
gene id XLOC_037605
gene name ACVR1C
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 5271524 ~ 5318873 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073854
TACGTGTTGTCGCTTTGAGGTTTATTTCTAGTGATGCAATGCAAACAGTGTGGAAATGTAGCAGATTTGAGCTATGATGACTTTATCTCAGAAGGTGGATGTATCGATCTGCAGACATTAAGTGACAGATGTCATGTCTCATCCCAGGTGCTCAGATGCAGCGCTTTTCATCTTCACGTTTGTGCAACTGACTGCAGCCTTAAAGTGTGTATGCCACTTGTGTGTCAACCACACGTGTGAGACGGAGGCAGAAGGCGCTTGTTGGAACTCAGTGATGCTCATAAACGGGAAGGAGGAGACGGTGAAATCCTGCGTGTCCCCATCAGAGTTGAAGGGTCAGGTGTTCTGCTACAGCTCCAGAAATGTCTCCAAGCGCAACTGCTGCTTCACAGACTTCTGCAACAATGAAACACTGCACCTCAATCCAGAGCAACCACCTGAGGATTCTGGTTGGAGTCAACTGGAAGTAGCAGCAGTAATTCTTGTACCGTCATGCCTGGTGTGTGTGGGTGTCATGCTAGGAGTGTGTGCTATACAGAACCTACGATGCACACACATTAAATCCCTCAAACAGGACCCAGAAGAACCCCTGGATGACCCAACTCTGGTCTCACCTGACAAATGCCTAAAAGAGCTCATCTATGACATGAGCACCTCTGGTTCAGGATCAGGATTACCCCTATTGGTCCAGAGAACAATTGCTCGAACTATTGTCCTCCAGGAGACCATTGGAAAGGGACGGTTTGGGGAAGTGTGGAGGGGAAAATGGAGGGGAGAGGACGTTGCTGTGAAGATCTTCTCTTCACGTGATGAGCGCTCCTGGTTCCGTGAAGCTGAGATTTATCAGACCATCATGCTACGTCATGACAATATTTTGGGGTTTATTGCGGCTGATAACAAAGATAATGGTTCATGGACACAGCTGTGGCTGGTGTCTGAGTATCATGAGCATGGATCACTCTTTGATTACCTGAACAGGTTCACAGTATCAGTGGAGGGGATGATAGTTCTGGCACTATCCATAGCCAGCGGCATCGCCCATCTGCACATGGAGATTATTGGCACCCAAGGGAAGCCGGCCATTGCTCACAGAGACATAAAGTCAAAGAACATCCTGGTTAAGAAGAATGGGGCTGCAGTGATTGCTGATCTTGGTCTGGCTGTCAAACATGACTCCAACACCAACACCATTGACATCCCCATTAACCACAGAGTGGGAACCAAGAGGTATATGGCTCCTGAGATTCTGGATGATTCCATAAACATGAGCAGCTTTGAGTCGTTTAAGCGTGCTGATATCTACTCGCTAAGCTTGGTATTCTGGGAACTTGCTCGCAGATGTTCCATTCAAGGGATTCATGAAGATTTCCAGCTGCCTTATTATGACCAGGTGCAATCAGACCCATCACTAGATGATATGAGGAGAGTGGTGTGTGAACAGAAACTCCGACCCAACATTCCCAATCAGTGGCAGAGCTGTGAGgCACTGAGAGTGATGGGTAAGATTATGCGGGAGTGTTGGCATGCCAATCCAGCTGCTCGGCTGACAGCGCTACGTGTCAAAAAAACCATATCTCAGGTGACTGTGGTCAAGGATGTTAAAGAATAACCCCAAAGCCTGCTGTTTCTCTTATCTCTGTCTATCAGTGTTACTGGGACATAGCACAGTTGAGATGCCAAAGAATGAAGTTTAAGAGGGAAAAACTGTGAGACACAATGTTGTAATAATGAATggagtaatgtgtgtgtgtgtgtgcgtgtgtgttttgtaGTCTGTAAATGGTAATTGAGTACTGATACACTGCTACCTCAGTTGAAGTGTTGCACATTATGACCTTTGCACATTATGCTTTGTGCCATAAATGTTTTGTCTGTTGTGCAGATAAATAGTTGCTGAAATATTTTGACACACTAAGTCAcatatgtgtatgcatgtgctTGTATACACAGTAAAAGATTATTGTTGTTATCTGTATTTTGCTTTTTTCATTGGTTTGGTACTATTTTCATAAGTTAGATGGACATTTTCAAATCTCTTCGTTCAAAACTTTAAACCACATTTCAAATTATGTCATGATTTTTGTGCCGTCGCACATATTTTCATTCCACATTATCATGGTTTCAGAACACAAGCTCATTGTGAAATGTATTGAGAACATTTGATTTAAGCACCAAAATACaacagtaagattttttttttatcttataatcttagtacttaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatttttttttttatattttttttttttttttttttttttttaaatatatatatatatatatatatatttttttttattttatatttaaatatatatctctatatatctatttctttttttattttcatttattcct

Function

symbol description
acvr1c Is expressed in heart.

GO: NA

KEGG:

id description
ko04350 TGF-beta signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04550 Signaling pathways regulating pluripotency of stem cells
ko01001 Protein kinases

Ensembl:

ensembl_id ENSDARG00000086172

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073854 True 2522 mRNA 0.39 9 5271524 5318873

Neighbor

gene id symbol gene type direction distance location
XLOC_037604 cytip coding downstream 7577 5253137 ~ 5263947 (-)
XLOC_037603 nr4a2a coding downstream 225209 5040985 ~ 5046315 (-)
XLOC_037602 NA coding downstream 404085 4866100 ~ 4867439 (-)
XLOC_037601 fmnl2a coding downstream 414757 4730398 ~ 4856767 (-)
XLOC_037600 galnt13 coding downstream 665061 4538527 ~ 4606463 (-)
XLOC_037606 tnfsf13b coding upstream 6142 5325015 ~ 5337923 (-)
XLOC_037607 abhd13 coding upstream 26363 5345236 ~ 5351017 (-)
XLOC_037608 CCKBR coding upstream 457486 5776359 ~ 5805229 (-)
XLOC_037609 GPR89B coding upstream 574735 5893608 ~ 5916755 (-)
XLOC_037610 tmtops2b coding upstream 799489 6118362 ~ 6208067 (-)
XLOC_037598 FP102171.1 non-coding downstream 824420 4443918 ~ 4447104 (-)
XLOC_037589 NA non-coding downstream 1876003 3358397 ~ 3395521 (-)
XLOC_037588 NA non-coding downstream 1991073 3265568 ~ 3280451 (-)
XLOC_037587 FP236594.1 non-coding downstream 2117238 3153726 ~ 3154286 (-)
XLOC_037613 FQ377643.1 non-coding upstream 1090284 6409157 ~ 6409271 (-)
XLOC_037614 NA non-coding upstream 1212676 6531549 ~ 6548796 (-)
XLOC_037618 BX842683.1 non-coding upstream 1398804 6717677 ~ 6717801 (-)
XLOC_037626 BX942813.1 non-coding upstream 2038946 7357819 ~ 7359484 (-)
XLOC_037631 NA non-coding upstream 2180387 7499260 ~ 7505531 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000367_00171001_00186824 TGFBR1 coding CI01000367 null 170842 ~ 187231 (-)