G1835121


Basic Information

Item Value
gene id G1835121
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 15796709 ~ 15797828 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2101583
ACAACTAAATGAGTTCAGTCATGTTGGAATTTAATATTTACCTAAGTCATGCCTTGCTGTAAGATTATGGACCAATATATTTAAGTTAGGCCATTAACGACAACTGCCTGTGGTCCTTAACTTTAAGTGTGGCCTTTACTATTACTCATAGTGGGAATTATACGGCTCAGAAGCAGCCTAATGTACCACAGAATAAATATGAGAGTGTGGGAATGGCAAAGCAGGTTTGGAGGATTTGTCTGATCACAGAAACACGCTATGAACAGTGTTGCGTACAGTTGGAACAAAACGGAAGACAGTGTTTTGAAACAGAGGAAGTAATACCCCGGCTAGTCCTATAAGTATGCTCATTCTTGTTTTCAAAACACTTTCTCCCATTTGTTTGTACATCAACGCGACCCAAGTAACATAAAAGCCACGCACGTTACAGGTCTGGTTCTGGTCAAACACAGGCAATAACAAATTAGTACTTTTTCTGCTGATCACTACATGCATCCATAACGTGGTCTGTTACCCACCTACCTGAATGCTCGACTCCGCTTGCAGAATCTGAATGTAATACCGGAGCTGTGTCGTGATGCGCATTGTGATTTCTTTGTCACTGGATTCAGTTGACTTGCAGCACTGTGAGATCTCTGGGTGATGCCATTACTCAAGGGACAACTTAATTTGACAGATGTGCTATGAGTAGAATGCATGGTTGTGTTGCTGTAAATGTTAGCTGCCTATTGAAGTGACAATGTTATGCGTAGGTACACCTCACttgattttttttttcccccctcatgagATGCATTGCTTTCAAACAGCTACAGATAAGGTTACCAGGTCTTGTGTTATAAGGCCCAGATCTATATTGAACCCATGTATAACATTTCTAATACTAAAAAAGTATTTGTTACAAAAGAGTTCTATTTTCGTCATTCGGTGTTGGTTGTTCAGTGAACTCAGTTTTATTTGACTAGAAATGTGTAATTGAACGCTATAAAATGTTAAAAGATTAGACAGATGCAACGGTGTTGTCTGTGTAATATACTTTTAATAAACAAATATGAAAGTATTCTCTGATTTAGTTATGTTGAGTATGTTTCAGTGGCATTCACACTGGCCTTTTGGAGCA
>TU2101582
ACAACTAAATGAGTTCAGTCATGTTGGAATTTAATATTTACCTAAGTCATGCCTTGCTGTAAGATTATGGACCAATATATTTAAGTTAGGCCATTAACGACAACTGCCTGTGGTCCTTAACTTTAAGTGTGGCCTTTACTATTACTCATAGTGGGAATTATACGGCTCAGAAGCAGCCTAATGTACCACAGAATAAATATGAGAGTGTGGGAATGGCAAAGCAGGTTTGGAGGATTTGTCTGATCACAGAAACACGCTATGAACAGTGTTGCGTACAGTTGGAACAAAACGGAAGACAGTGTTTTGAAACAGAGGAAGTAATACCCCGGCTAGTCCTATAAGTATGCTCATTCTTGTTTTCAAAACACTTTCTCCCATTTGTTTGTACATCAACGCGACCCAAGTAACATAAAAGCCACGCACGTTACAGGTCTGGTTCTGGTCAAACACAGGCAATAACAAATTAGTACTTTTTCTGCTGATCACTACATGCATCCATAACGTGGTCTGTTACCCACCTACCTGAATGCTCGACTCCGCTTGCAGAATCTGAATGTAATACCGGAGCTGTGTCGTGATGCGCATTGTGATTTCTTTGTCACTGGATTCAGTTGACTTGCAGCACTGTGAGATCTCTGGGTGATGCCATTACTCAAGGGACAACTTAATTTGACAGATGTGCTATGAGTAGAATGCATGGTTGTGTTGCTGTAAATGTTAGCTGCCTATTGAAGTGACAATGTTATGCGTAGGTACACCTCACttgattttttttttcccccctcatgagATGCATTGCTTTCAAACAGCTACAGATAAGGTTACCAGGTCTTGTGTTATAAGGCCCAGATCTATATTGAACCCATGTATAACATTTCTAATACTAAAAAAGTATTTGTTACAAAAGAGTTCTATTTTCGTCATTCGGTGTTGGTTGTTCAGTGAACTCAGTTTTATTTGACTAGAAATGTGTAATTGAACGCTATAAAATGTTAAAAGATTAGACAGATGCAACGGTGTTGTCTGT
>TU2101584
ACAACTAAATGAGTTCAGTCATGTTGGAATTTAATATTTACCTAAGTCATGCCTTGCTGTAAGATTATGGACCAATATATTTAAGTTAGGCCATTAACGACAACTGCCTGTGGTCCTTAACTTTAAGTGTGGCCTTTACTATTACTCATAGTGGGAATTATACGGCTCAGAAGCAGCCTAATGTACCACAGAATAAATATGAGAGTGTGGGAATGGCAAAGCAGGTTTGGAGGATTTGTCTGATCACAGAAACACGCTATGAACAGTGTTGCGTACAGTTGGAACAAAACGGAAGACAGTGTTTTGAAACAGAGGAAGTAATACCCCGGCTAGTCCTATAAGTATGCTCATTCTTGTTTTCAAAACACTTTCTCCCATTTGTTTGTACATCAACGCGACCCAAGTAACATAAAAGCCACGCACGTTACAGGTCTGGTTCTGGTCAAACACAGGCAATAACAAATTAGTACTTTTTCTGCTGATCACTACATGCATCCATAACGTGGTCTGTTACCCACCTACCTGAATGCTCGACTCCGCTTGCAGAATCTGAATGTAATACCGGAGCTGTGTCGTGATGCGCATTGTGATTTCTTTGTCACTGGATTCAGTTGACTTGCAGCACTGTGAGATCTCTGGGTGATGCCATTACTCAAGGGACAACTTAATTTGACAGATGTGCTATGAGTAGAATGCATGGTTGTGTTGCTGTAAATGTTAGCTGCCTATTGAAGTGACAATGTTATGCGTAGGTACACCTCACttgattttttttttcccccctcatgagATGCATTGCTTTCAAACAGCTACAGATAAGGTTACCAGGTCTTGTGTTATAAGGCCCAGATCTATATTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2101583 False 1120 lncRNA 0.39 1 15796709 15797828
TU2101582 False 1027 lncRNA 0.40 1 15796802 15797828
TU2101584 True 860 lncRNA 0.41 1 15796969 15797828

Neighbor

gene id symbol gene type direction distance location
LOC110502330 LOC106605086 coding downstream 91290 15702242 ~ 15705419 (-)
tmem254 cj057 coding downstream 125486 15666203 ~ 15671223 (-)
LOC110502324 LOC106605068 coding downstream 150461 15633647 ~ 15646248 (-)
LOC118943902 NA coding downstream 260645 15534830 ~ 15536064 (-)
pwwp2b pwwp2b coding downstream 270187 15518820 ~ 15526522 (-)
LOC110502332 mcfd2 coding upstream 1542 15799370 ~ 15804977 (-)
LOC110502333 LOC102778633 coding upstream 67243 15865071 ~ 15869051 (-)
trnai-uau-47 NA coding upstream 578052 16375880 ~ 16375973 (-)
LOC118943947 NA coding upstream 848552 16646380 ~ 16646432 (-)
LOC110502345 eml4 coding upstream 875581 16673409 ~ 16764042 (-)
G1835122 NA non-coding downstream 4451 15791949 ~ 15792258 (-)
G1835115 NA non-coding downstream 16166 15780320 ~ 15780543 (-)
G1835113 NA non-coding downstream 18943 15777536 ~ 15777766 (-)
G1835112 NA non-coding downstream 19949 15776389 ~ 15776760 (-)
G1835110 NA non-coding downstream 21114 15775235 ~ 15775595 (-)
G1835179 NA non-coding upstream 66417 15864245 ~ 15864557 (-)
G1835183 NA non-coding upstream 73391 15871219 ~ 15871433 (-)
G1835167 tacd2 non-coding upstream 114902 15912730 ~ 15915938 (-)
G1835214 NA non-coding upstream 122645 15920473 ~ 15927155 (-)
G1835434 NA non-coding upstream 289037 16086865 ~ 16087584 (-)
G1835092 NA other downstream 48974 15745638 ~ 15747735 (-)
G1834927 NA other downstream 296448 15498754 ~ 15500261 (-)
G1834810 NA other downstream 629790 15166209 ~ 15166919 (-)
G1833570 NA other downstream 1275780 14520349 ~ 14520929 (-)
LOC110502353 LOC106605805 other upstream 1625647 17420323 ~ 17425430 (-)
G1837980 NA other upstream 1911944 17709772 ~ 17719204 (-)
LOC110502361 LOC106605890 other upstream 1927435 17725263 ~ 17781515 (-)
LOC110502394 LOC106606249 other upstream 3051869 18849389 ~ 18854222 (-)
si:dkey-51a16.9 LOC106576688 other upstream 3314214 19111958 ~ 19145332 (-)

Expression


Co-expression Network