G1835167 (tacd2)


Basic Information

Item Value
gene id G1835167
gene name tacd2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 15912730 ~ 15915938 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2101641
AACACTTTATTAATAGACAATGCATATGAAACTGTACAGTCTGCAGCATTCAGACTTCATTTAATAAAAACAATGCATTTAAATCAACCTGGACATGTATCCTGTGTTTCTGAAGCACTGTAGCTTTGCCATTTTACAGACATGAGGATTTAAAtgacaacagtttatatacaaacaTGCTTGTGGTAGTAACAGTGCCAAATAAAAAGACCAGTCCTTTACAAACGGCATCCCTCAAGTAACAATATTAAAAACAGCACAATTGCAAACAATGTTTTGTTAAAGGGCTATATACAAGCTGTTAATATTCCAGCGTAGAACCGACTGGTGAAGGGTTGTCTACAGGGCCTCCATCTCTCTGGGCTGAAAGGGAAAGCAAccaaacaaaacattaggaatcaCGGGGCAATTGGTTTTTCAATGTGCCGGTATGGTTTTAAATTAGGAGAATGTCCTTACTATATTACATAAAACCATGACCACAACAGGAACAGCTTATAGACGCAGTGTTTCAAATGCTTCTTTAACCTCGTTATCAGAGGAACATGTTGGACCACTCACCTCTGCCTTGCTGTACTTCTGCTCTCGCTTCCTCGCAAAGTAAAGGACCAGCAGTCCGGCGACCACAGCCAGGATGACCACCACGATGACTGCGATAATGCCCCCGGTCAGCCTCTTCATGGTGAAGGTGGGGGCCTCCTCGTCCACATAGTACACCAAGATGTTCTCCATCTCCAGCTTCTGACCGTCCACACTGGGTGCAAAATTTTCTTGGTTCGCGAACAGGGGCAGCACCTTGACTCTTTCTCCATGTAGTAGGCCATACGCGATAGGTCGGCTTTGCGGTCTCCCTTCACTTTCTGGACATCGACGATGATCTTGCGAGCATCAGGGTCATACTGCACCTCCTTCACAAGGGTCTTGTCAAAGCTGTAACGGGTCTCCATGGCATTTGCAATGGCACTGCAGGAGGACAAAGTTCAGTGAGTAGTCTCATGCACGTGTTAATATTATAGCACTTGTGAAATGTAAAGCTGACACAACTACCATGAAACGGACATAAATACTTACGCCTGCAACTTAGAAGTGTCCACGGCTTTGCTCACTTCCTTGTGCTTGAGCTCCAGGCGAACCCAACTGGAGGAGTGAGGGACGGGGTTAGATTTCAATACCCAGTACAATTGCCTAGCCTAGTCAACAGAATTTGGATTCAGCCTATCACTTATCTTTTCTTAATCATCCTGAATTTGTTTCACTAGCATAATACGTGTTCTCAGTCTGTACACCAATTAAAGCCGAAGCCACATCCTGCATGAATGGCAACCCATGATTCTTAATCTAAATATTAAAGGTCTACCGATTAAAAATCGGATtagccgatttcaagttttcataagaatcggaaatcggtattttgaGACCAATTTGGCCGATTTTTtaaaacacctttatttaactaggcaagtcagttaagaacacattatttttatcaatgacggcctaggaacggtgggttaactgcctcgttcaggggcagaaacagattttcaccttgtcagctcgggggatccaatcttgcaaacttacagttaactagtccaacgctataaccacctgcctctcattgcactccacaaacagacagcctgttacgcgaatgcagtaagccaaggtaagttgctagctagcattacattTATCgtataaaaatacaaatagtatagagggaaatagtcctataataactacaacttcttacctgggaatattgaagactcatgttaaaaggaaccaccagctttcatatgttctcatgttcttcgcaaacactttgtttttgcattatttaaaccaaattgaacaagtCAATATTTATTTGAGGCAAAAATTATTTtactgatgtattatattaagttaataagtgttaattcagtattgttgtaattatcattaaaaaaaaagtattattattttttaatcggCTGATTagtcggtatctgcttttttggtcctccaataatcggtattgaaaaatcataatcggtcgacctctactaaaTACACATGATATAAACTTACTAGGtctccacaagcttctcacactTGAGGTTCTTGTCTCCCTTGTCGGTTCTGCGCACGCCAGCACTGTTGACACACCAACACTCCTCAGTGTTGTTGCACTGTTTGGCACGGAAGGCACCAGTGGCCTCACAGATCGGGTCATAGATACCATCATTGTCCACAAAGGCGGTCTCGACTGGCTTTCCTCCAGTACGAGTGGACAGGTTGTTCTTAGCACGGTACATCTCTGCCTTCATCAGGTAGCATTTGGGGATCACTAACAGAGGGATAAGAGACCATAAGAATCATTCATAAGCAAAATAACACGATGAGAACACATCACCAGTTCCGGAAAAACAGTTTCCACCCccccctttttttaaatgtatgctcaTTGTAATATTTATGACAGGAAATATTAAAAGTTTCCCAAGTGAGATTAATGTTGCTTGACATAGTAATGAGAGGGGTACTTACATGTAGAGCAGTCCAGGTTTTGTGTTATTCTAGTGTCAACCATAATGCTACACTGGCAAGGGGTGCCATCGCATGTAGCCCACTTCATACTTTCACATTTGCCTGTGGAAGACAAATTATACATGAGGCTAGTCTGAAATACACAATCGGTTCAACCTGAAACTAATACTTGCAAAGTCGTGCACATTTCTTTAAGCCAgagggttattattattattatttttacatttaaaaaagtagGAGTTGGTTCTCTGTGCGGTTTGCCCAACATCTGCCAGATATGAGACAAAATATCCACACGAAAGTTGTTTACCCGACTTTTTAGAGACCCGGTAGGTAGCGGTTATGGTTCGGGATCGAGGTAAAGTTCGGAACATTTACACCACTTTGCAAGCATTCGTTTTAGGCTGTATATACACGCCAATTAAATTGTGTATTACAACCTGACTAATCAGACGACCACGGGGCCAACCACAGGTGATGTAACAAATAGCCATGTTTATTAGAGCGGAAGCAGTTAAAAAC

Function

NR:

description
Tumor-associated calcium signal transducer 2 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2101641 True 3063 lncRNA 0.41 2 15912730 15915938

Neighbor

gene id symbol gene type direction distance location
LOC110502333 LOC102778633 coding downstream 43679 15865071 ~ 15869051 (-)
LOC110502332 mcfd2 coding downstream 107753 15799370 ~ 15804977 (-)
LOC110502330 LOC106605086 coding downstream 207311 15702242 ~ 15705419 (-)
tmem254 cj057 coding downstream 241507 15666203 ~ 15671223 (-)
LOC110502324 LOC106605068 coding downstream 266482 15633647 ~ 15646248 (-)
trnai-uau-47 NA coding upstream 459942 16375880 ~ 16375973 (-)
LOC118943947 NA coding upstream 730442 16646380 ~ 16646432 (-)
LOC110502345 eml4 coding upstream 757471 16673409 ~ 16764042 (-)
LOC110502346 pkdcc coding upstream 975416 16891354 ~ 16923979 (-)
LOC110502348 LOC106605759 coding upstream 1111811 17027749 ~ 17096659 (-)
G1835183 NA non-coding downstream 41297 15871219 ~ 15871433 (-)
G1835179 NA non-coding downstream 48173 15864245 ~ 15864557 (-)
G1835121 NA non-coding downstream 114902 15796709 ~ 15797828 (-)
G1835122 NA non-coding downstream 120472 15791949 ~ 15792258 (-)
G1835115 NA non-coding downstream 132187 15780320 ~ 15780543 (-)
G1835214 NA non-coding upstream 4535 15920473 ~ 15927155 (-)
G1835434 NA non-coding upstream 170927 16086865 ~ 16087584 (-)
G1835450 NA non-coding upstream 203619 16119557 ~ 16119799 (-)
G1835512 NA non-coding upstream 304275 16220213 ~ 16220480 (-)
G1835513 NA non-coding upstream 304722 16220660 ~ 16220859 (-)
G1835092 NA other downstream 164995 15745638 ~ 15747735 (-)
G1834927 NA other downstream 412469 15498754 ~ 15500261 (-)
G1834810 NA other downstream 745811 15166209 ~ 15166919 (-)
G1833570 NA other downstream 1391801 14520349 ~ 14520929 (-)
LOC110502353 LOC106605805 other upstream 1507537 17420323 ~ 17425430 (-)
G1837980 NA other upstream 1793834 17709772 ~ 17719204 (-)
LOC110502361 LOC106605890 other upstream 1809325 17725263 ~ 17781515 (-)
LOC110502394 LOC106606249 other upstream 2933759 18849389 ~ 18854222 (-)
si:dkey-51a16.9 LOC106576688 other upstream 3196104 19111958 ~ 19145332 (-)

Expression


Co-expression Network