XLOC_037612 (nck2a)


Basic Information

Item Value
gene id XLOC_037612
gene name nck2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 6393368 ~ 6502491 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073867
GTCGTTTTGACAGAGATTACCTCAaattaataacatatttattcattttccttcagcttagtttctttattaatcaggagtcgccacagtggaatgaaccgataactttttcagcatatgttttactggaTGCATGAATAACTATTAATGATTAAAACATTCTACAATTTGATTGTCCTGCTCTTATGCATGTGATAAAATCTGCTTGCTTCCAAACTTTCATTAGTACATTGTAACTAAACTTTGAGTATTTGATGAGctcctccatcatcatcatcatcatcatcagaagtGTCGCGCGCCTCCCTCCGCGCTCTCGCTGTGCCATGGCAGCGGTGACGTCACCCGTGCATTGACTCGCGCTGGCGGCGGAGAGCGAGAGCTTGAACAGACCGAGGGTTGGAGAGAGGAGAGGAGCAGCCTGGGCCCCGCggaccataaataaataaacaaaaactaaacccAAACGGATTTACCTTCGCTTCGCTTTATCCTACCAATCCAAGTCTGCAAAGAGAGCGTGTTTTCAGCGCGATTTGAAGCCCGATCTGTCAGGAGTTACAGCAAGtGGGACTCGATGAAAGATGACAGAGGAGGTGATTGTTATAGCCAAGTGGGACTACACAGCTCAGCAAGACCAGGAACTGGACATCCGGAAGAACGAGCGGCTCTGGTTACTGGATGATTCCAAAACCTGGTGGAGAGTGCGTAACGCATCCAACCGCACTGGCTACGTCCCCTCTAATTACGTGGAGCGCAAGAACAGTCTGAAGAAAACCTCACTAGTGAAGAACCTGAAGGACACTCTCGGACTGGGCAAAACGAAAAGGAAGACCAGTGCTCGTGATCCATCTCCCACACCCAGCACAGAAGCAGAATATCCATCCAATGGCAGCGCAGGAGGAGGCGGAGGGGGCGGAGCTGAACGAATTTATGACCTGAACATTCCGGCATTGGTGAAGTTCTCTTACGCAGCCGAGCGGGACGATGAACTCAACCTCGTCAAAGGGGAGAGGGTGGTCGTCATGGAGAAGTGCAGCGATGGCTGGTGGAGGGGTAGCCATGCTGGCCGTGTCGGCTGGTTCCCGTCTAACTACGTCCAAGAGGAAGTGGGATACACGGACAACGATGGGGTGTTCGGGGACACCGTGGGGGGGTTCCGGTCGTTGAAGGTGGGGCAAGGTTCAGCAATGGCCAACGGCCGGCCGGGGGGCTCTGGGAGCTCCGTTCTGCATGTGGTTCAGACTCTGTACCCCTTCAGCTCAGTCACAGAGGAGGAACTAAACTTTGAGAAGGGTGAGACTATGGAGGTTTTGGAAAAGCCCGAGAATGACCCGGAGTGGTGGAGGTGTAAAAACAGCCGCGGAATAGTAGGCCTTGTGCCTAAGAACTATGTGGTAGTGCTTGATGACGGGCCGGTAGCAAAGGGCTTAGGGTCAAGTCATGGATCCCCTCACATCAGTCACACAGTGCCCTCGCGTGTAGGAAAATTTGCTGGAAAGGGCTGGTACTATGGTAATGTGACACGGCACCATGCAGAGTGTGCGCTTAATGAGAGAGGAGTGGAAGGAGACTTCCTTATACGGGACAGTGAGTCGTCGCCCAGTGACTTCTCCATTTCTCTGAAAGCTGTGGGAAAGAACAAGCACTTCAAGGTGCAGCATCAGGACGGAGTGTACTGCATCGGTCAGCGGCGTTTCAGCAGTATGGATGAGCTTGTAGAGCACTACAAGAAAGCGCCCATCTTTACCAGTGAACAAGGAGACAAACTCTACCTTGTCAAGGCCCTTGGctaaatctgacttttttttccctCAACAAACATTACCTCTTTTCCTCTTTCGTCTATCTTTTTGTTTCCTGCACACTCCTGACATAGGATTCCTTCTTAAGCATTGACATTTCAGATCCCTACATTGCCTCGACTCTTGTAGGGAGCAGTAGCAACTTTAAACAAAGATGTCCGTCCTTGATAACCGTGTCCGATTTTGAAGGTTTATAGATAAATGATGTAAAGACAATGCCGTTTTCACAGCCACTTTTCGGCTCTTCCTGCTTTCAAGCTGGTTAATCCCCAACCTCAAGCCACATTACGTTAGTTTACATTCTTCTGCCCCAAAGAGAATCGCAGTATGTACCTTTGTAGCTCCTGTTCTGAATGGATTCATGTGTGTGATTCTTGATACTGACGGCCTGGAAAAGAACAAGGAGTGATTTTGGTTCCCAAAGGATTGCCATTCCATTCACAGGAGAGTTCGTCTGAAGATCACCCAAACATCTCAGTGTGTATACACTGTCAAAGTAACACATAGGATGACAGTCAGATTTCACCCTGTATTAAATCGGTGCTGTCCCATCTTCTGAGCCTTTACACTGTTTTTTGCATCTACAGTCCGTCCAGCATTAATAAAAGGAAGTGTTTGGATTTACCTACACAGCTTTCCAGGTATTCCTCCTGGATCCGAGTCACTTCAGGGTTTCTTCAGTATCAGGGTACTTCATAAAGGGAGATCAATGCTGCGGAGACTGGGATAAAGAGAGGAGCTGTAGcttgtaagagagagagagagggtagtTTCAGAGTTTTGAATGTGTGTCCTTTCAACCAAATGTGCCACCCCACTTCCAGTTCTGCTACTATTGATGTCTTATCGCACCTCACCAACTCTGCTCTCAGTAACACACCGTTGATTGTGAACACTAATTCAAGAGtaatacaaacaaacatgttgattttatttctttacgtTATGTTAGTTGCTCTGTTTACCAATAAGCCTGTTGGTCAAGgggttttcagattttttttttttttaagtctatttGTCTGAATGTTATTGAGCAATGTTATTTAATTCCTCTTTCcactgtatgtacatatatatatatattatattaaagaaaaaaaagatatggTGCATATATATGAATCGTTTAGATCCAGCATTATGGTACTGTATTGAGGACAGTGTGGTGAGAATTGAAATACTTTTGTTCAATAAAAGTTTTGCAGAATAAGTTAAAAGGACCTTCTGAGTTGTGGCTTTTCTTAACGTATATATCACAATAGAACTATGTGGATTTCTAATTTACGGAGAATGaatgtacaaaatatatatttcatctGTCATGTGTGCAGTTGACCAATAGATGTCACTAACTGACAGCTCTGGAAAAAGGAAAAAGTACAAGGAAACTTTCTGTTCATAAATATACTGTCGAAATcataattattaaccccctgaattttaagccccccccccccccctttttattttttttcccaatttttgtttaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgataaaaaaacaacaatatttcgttaaagtgtaataataataataacaataaactttACAACGCAAAAACATTACACACATATATTAATAccgctgttctgtgtcagtttaatcagttgactgttgaaattcaaagttttaacccaactggtcgagttattaagaaataacctaataaaggttaaacaaataacccaacaaagcaccaaatatgtttaactcaactattgggttaattaaataactaactCAACGTTTTTTAGTGTAGAAAAAattccattgtgctctgcatacAAATACCTGCAGTTGAAGAAATCTCATTGTGCTCTGTCTGTCAGGTGTTCCAGCTCACAGGGAGATCAGGGAAAAGAGGAGCGTCCCATACTGGAATCTGTGGTCATCTGACTTCTATGGTTGGGTGGACGTGCTGCGTTCTCAGAGCGGATATGACACACTTCTGGACTTGGCAAGAAACTACTGGGCTCACTATCCCGTTGCTGGTGTTCTAGGTTACGGAAGCACCCCAGGCCAAACAGACGGTCCAGAACTGGAAGTTGAAGATTTAAAATAACACTGTCCTTCCCCACTGGGCTTCCTCTACGTACCCTTTCATTAGCTGTCTGGATTTTATCTACtgcaatattgtgcatgttttttCCTTGTTGTGCATTCTCTTATGGGCTTTTCACCAAAAGAGAATCCTTTCCACAGGTTTAGTTTACTCAGCCTTTTGTTCTTGCAAAATAACTGTCCGCACAAATGATCCGTGTGATTCAGAGATGCCTGTTGTCAGTTTCACATTAAGTATACCAGTTTTGTAACCGAATTTCGAATTGTAAGTGCAACAATAAATGCATTCTATGAAAGACTTTTAAAGCTGTTTCATAATTGCATTATGAATGTCTaatggggtgacatggtggctcagtggttagcactgttgcctcacagcaagaaggttgctggttcgagtcccggctgggtcagttggcattttatcATCATGTTAAAATAgatgggttaaaaataccccaacatataacccaactagattattatagcaccttcccaactatgggttattttaacccaatgcattgggttattttgattaaatgtaatttttttttccattctggtattactattgctactattaccagtactactattaatttttataattaagactgtgtaaataatacatacaatattcaaaaatattgaaaatgttttttttccgcTGCATTTCAGTTCCTGACACTTTTGTCGAAATAAATCAAcaatcacaaacaatgaagaaacagatCAAAGTGCAGACAGTTATAAACTGTGCAAGCAGAACATTATGTGTTGACGGAGCAGCATTTTAGCCACATCCAAATGCTttctaaaag
>TCONS_00073869
GTTGGAGAGAGGAGAGGAGCAGCCTGGGCCCCGCggaccataaataaataaacaaaaactaaacccAAACGGATTTACCTTCGCTTCGCTTTATCCTACCAATCCAAGTCTGCAAAGAGAGCGTGTTTTCAGCGCGATTTGAAGCCCGATCTGTCAGGAGTTACAGCAAGtGGGACTCGATGAAAGATGACAGAGGAGGTGATTGTTATAGCCAAGTGGGACTACACAGCTCAGCAAGACCAGGAACTGGACATCCGGAAGAACGAGCGGCTCTGGTTACTGGATGATTCCAAAACCTGGTGGAGAGTGCGTAACGCATCCAACCGCACTGGCTACGTCCCCTCTAATTACGTGGAGCGCAAGAACAGTCTGAAGAAAACCTCACTAGTGAAGAACCTGAAGGACACTCTCGGTAAGAAGTCTCACAGTTCATTGAAGCATTTCACCAATTCCAAAGCCCTGTCGAACTAAATCCATTCGACAGCCATGATATATGGGTTGTTGACATGACGTTACGTTAGTGACCCCTAGTTTTTTCTCAAGCATCAGACTTCAAACAAGTGTTTCATTTATTTCTACAAAAAGCCTACCTACTTGTCTACTACCCATATATTACATATAGAAAAGTACATCAACCTAAATCTCTAGAACTGTTGGCAGAGTTTACGCATCTTTTATATCTTATTCCAAATCAGCAAACTCTGACTATAAATTTAAAGCCTGctctcctttgttttgttttatcttgaaCTGGACGGGGATTTTTATAGCCACATGTGCTTTAAGGTTTAAGGTTCTGCTAAGGTCATGAGATAAATGGAGTTGTTTTGATCCAAATGTCACGGAAAAGAGCTTGTGCTGGTCTAGGCCTTGTACACTTTTAGTAGGAGATGACGTGTATGAAACACCCTCGCAGTTGCCATGCCCTACTTCCCCCATACGCCTCCAGAGCTTCATGCCTTTAACGCACA

Function

symbol description
nck2a Predicted to enable receptor tyrosine kinase binding activity and signaling adaptor activity. Predicted to be involved in several processes, including cell migration; regulation of response to endoplasmic reticulum stress; and regulation of translation. Predicted to act upstream of or within actin filament bundle assembly; barbed-end actin filament capping; and regulation of translation. Predicted to be located in cytosol and endoplasmic reticulum. Is expressed in rhombomere 3 and rhombomere 5. Orthologous to human NCK2 (NCK adaptor protein 2).

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-686 Predicted to enable receptor tyrosine kinase binding activity and signaling adaptor activity. Predicted to be involved in several processes, including cell migration; regulation of response to endoplasmic reticulum stress; and regulation of translation. Predicted to act upstream of or within actin filament bundle assembly; barbed-end actin filament capping; and regulation of translation. Predicted to be located in cytosol and endoplasmic reticulum. Is expressed in rhombomere 3 and rhombomere 5. Orthologous to human NCK2 (NCK adaptor protein 2).

Ensembl:

ensembl_id ENSDARG00000018206

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073867 False 4797 mRNA 0.42 4 6393368 6502491
TCONS_00073869 True 971 lncRNA 0.44 2 6414784 6502093

Neighbor

gene id symbol gene type direction distance location
XLOC_037611 ecrg4a coding downstream 12715 6371919 ~ 6380653 (-)
XLOC_037610 tmtops2b coding downstream 185301 6118362 ~ 6208067 (-)
XLOC_037609 GPR89B coding downstream 476613 5893608 ~ 5916755 (-)
XLOC_037608 CCKBR coding downstream 588139 5776359 ~ 5805229 (-)
XLOC_037607 abhd13 coding downstream 1042351 5345236 ~ 5351017 (-)
XLOC_037614 NA coding upstream 29058 6531549 ~ 6548796 (-)
XLOC_037615 C9H2orf49 coding upstream 105023 6607514 ~ 6618067 (-)
XLOC_037616 GPR45 coding upstream 121045 6623536 ~ 6624663 (-)
XLOC_037617 pou3f3a coding upstream 156103 6658594 ~ 6661666 (-)
XLOC_037618 BX842683.1 coding upstream 215186 6717677 ~ 6717801 (-)
XLOC_037602 NA non-coding downstream 1525929 4866100 ~ 4867439 (-)
XLOC_037598 FP102171.1 non-coding downstream 1946264 4443918 ~ 4447104 (-)
XLOC_037589 NA non-coding downstream 2997847 3358397 ~ 3395521 (-)
XLOC_037588 NA non-coding downstream 3112917 3265568 ~ 3280451 (-)
XLOC_037587 FP236594.1 non-coding downstream 3239082 3153726 ~ 3154286 (-)
XLOC_037626 BX942813.1 non-coding upstream 855328 7357819 ~ 7359484 (-)
XLOC_037631 NA non-coding upstream 996769 7499260 ~ 7505531 (-)
XLOC_037636 NA non-coding upstream 1439278 7941769 ~ 7942597 (-)

Expression


Co-expression Network