G1837942


Basic Information

Item Value
gene id G1837942
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 17520967 ~ 17581249 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2104635
aatttgtatttggtagcattgcctttacattttttaaacttgggtcaaacgttttgggtagccttccacaagcttcccgcaataagttgggtgaattttggcccattcctcctgagagagctggtgttactgagtcaggtttgtaggcctccttgctcgcacacacgttgtcagttttgcccacaaattttctatgggattgaggtcagggctttgtgatggccactcctataccttgtctttgttgtccttaagccattttgcaacaatcttggaagtatgcttggtgtcattgtccatttggaagacccatttgcaaccaagctttaacttcctgactgatgtcttgtgatgttgcttcaatatatcatcATAATTTCcctcatgccatctattttgtgaagtgtcccagtccctcctgcagcaaagcacccccacaacatgatgctgccacccccttgcttcacggttgagatggtgttctttggcttgcaagcctcccccttttcctccaaacataacgatggtcattatggccaaacagttctatttttgttccatcagaccagaggacatttctccaaaaagtacaatctttgtccccatgtgcagttgcaaaccgtagtctggcttttttatggcggttttggagcagtggcttcttccctgctgagcggcctttcaggttatgttgatataggactcgttttactgtggaaaaatatacttttgttcctgtttcctccagcatctacacaaggtcctttgccgttcttctgggattgagttgcacttttcgcaccaaagtacgttcatctctaggagacagaacacgtctccttcctgagcggtatgatggctgcgtggtcctatggtgtttatacttgcgtactattgtttgtaaagatgaaggtggtaccttcaggcatttggaaattgctcccaaggatgactcagatttgtggaggtctacaatttttttctgaggtattggctgatttcttttgattttgattttcccataatgtcaagcaaagaggcactgagtttgaaggtaggtcttgaaattcatccacaggtacacctccaattgactcaaattatgtcaattagcctatcagaagcttctaaagctatgacctcattttctagaattttccaagctgtttaaaggcacagtcaacttagtgtatgtaaacttctgaaccactggatttgtgatacggtgaattataagtgaacaattgttggaaaaatgacttgtcatgtacaaagtagatgtcctaaccaacttgttaacaagacatttgtggagttgttgaaaaacaagttttaatgactccaacctaagtgtatgtaaacttccgacttcaactgtacatggatAAACGCTTCACGGCATACTGGAACCATTTAACTTTGTAGCTACATCTAGTTTGTCACTtcggttcacactgaccgtggaATGTGTGCAGAAAGTATCCCATGACTTTTTCTACTTGATCTGTCGATAGCGCCGGCTAAATTCAGGGCAACAATAttgagaaaagtagcaaaacttTTGTAGTTCTCGATGGCTAACGTTAGATCTTTCAAAAATGGAGCGGTAGAAaggactgtcaacacatactgaacagcATGCTACATGACAGACCAATTGTttttcttgcaaagcatgtaaacattaTCAAACTATTATATTTATCTTACTATCCACAAAAATAGCATTAGTGTGCATTTAACCGTActcaatgtcacatgcacaagtacagtgaaatgccttttttGCAAAGCTCTAAACCAAACGATGCAGTAattaataacaatgtaatactaaaaataacataaggtagaacaaaaacacacaagcgTTAAGAAGAACATGAAGCAAGCGTACTATGTACAGAGTCAGTCTgttccatatttacaatgtgcagggatactggagtgataaagTGGACATGTATAGGTAAGGTGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2104635 True 1979 lncRNA 0.41 2 17520967 17581249

Neighbor

gene id symbol gene type direction distance location
LOC118943816 NA coding downstream 49277 17454706 ~ 17471690 (-)
LOC110502354 ncoa4 coding downstream 67498 17444474 ~ 17453469 (-)
LOC110502353 LOC106605805 coding downstream 95537 17420323 ~ 17425430 (-)
LOC110503085 NA coding downstream 443110 17067278 ~ 17077857 (-)
LOC110502348 LOC106605759 coding downstream 453450 17027749 ~ 17096659 (-)
LOC110502361 LOC106605890 coding upstream 144086 17725263 ~ 17781515 (-)
LOC110502365 LOC106605918 coding upstream 211581 17792830 ~ 17807178 (-)
LOC110502366 LOC106605925 coding upstream 233984 17815233 ~ 17828699 (-)
LOC110502367 LOC106605930 coding upstream 261387 17842636 ~ 17881838 (-)
LOC110502369 apmap coding upstream 366872 17948121 ~ 17956482 (-)
G1837941 NA non-coding downstream 623 17520039 ~ 17520344 (-)
G1837940 NA non-coding downstream 1348 17519333 ~ 17519619 (-)
G1837936 NA non-coding downstream 5415 17515321 ~ 17515552 (-)
LOC110502357 LOC106605561 non-coding downstream 9234 17508036 ~ 17647588 (-)
G1837930 NA non-coding downstream 35548 17485090 ~ 17485419 (-)
G1838048 NA non-coding upstream 81405 17662654 ~ 17720036 (-)
G1838165 NA non-coding upstream 359314 17940563 ~ 17940840 (-)
G1838166 NA non-coding upstream 359851 17941100 ~ 17941321 (-)
G1838168 NA non-coding upstream 368204 17949453 ~ 17986981 (-)
G1835092 NA other downstream 1773232 15745638 ~ 15747735 (-)
tmem254 cj057 other downstream 1849787 15666203 ~ 15671223 (-)
G1834927 NA other downstream 2020706 15498754 ~ 15500261 (-)
G1834810 NA other downstream 2354048 15166209 ~ 15166919 (-)
G1837980 NA other upstream 128523 17709772 ~ 17719204 (-)
LOC110502394 LOC106606249 other upstream 1268448 18849389 ~ 18854222 (-)
si:dkey-51a16.9 LOC106576688 other upstream 1530793 19111958 ~ 19145332 (-)
LOC110502408 LOC106606370 other upstream 1704147 19261070 ~ 19385465 (-)

Expression


Co-expression Network