Fish Transcriptome and Expression Database

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model fish

XLOC_037618 (BX842683.1)

Basic Information

Item	Value
gene id	XLOC_037618
gene name	BX842683.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007120.7
NCBI id	CM002893.2
chromosome length	56459846
location	6717677 ~ 6717801 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073875
agagggcgcaatatacagctagctctctgcaactctcacatggttgcccactgaagctaagcaaggctgtgCCTGGTCTGTACCTGGAtagaagaccacatgggaaagccagGTTGCTGCCTCGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000083322

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00073875	True	125	rRNA	0.54	1	6717677	6717801

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_037617	pou3f3a	coding	downstream	56011	6658594 ~ 6661666 (-)
XLOC_037616	GPR45	coding	downstream	93014	6623536 ~ 6624663 (-)
XLOC_037615	C9H2orf49	coding	downstream	99610	6607514 ~ 6618067 (-)
XLOC_037614	NA	coding	downstream	168881	6531549 ~ 6548796 (-)
XLOC_037612	nck2a	coding	downstream	215186	6393368 ~ 6502491 (-)
XLOC_037619	tmem182a	coding	upstream	197810	6915611 ~ 6927587 (-)
XLOC_037620	slc9a2	coding	upstream	245238	6963039 ~ 6991650 (-)
XLOC_037621	coa5	coding	upstream	363776	7081577 ~ 7089303 (-)
XLOC_037622	mgat4a	coding	upstream	373227	7091028 ~ 7213772 (-)
XLOC_037623	creg2	coding	upstream	510282	7228083 ~ 7238839 (-)
XLOC_037613	FQ377643.1	non-coding	downstream	308406	6409157 ~ 6409271 (-)
XLOC_037602	NA	non-coding	downstream	1850238	4866100 ~ 4867439 (-)
XLOC_037598	FP102171.1	non-coding	downstream	2270573	4443918 ~ 4447104 (-)
XLOC_037589	NA	non-coding	downstream	3322156	3358397 ~ 3395521 (-)
XLOC_037626	BX942813.1	non-coding	upstream	640018	7357819 ~ 7359484 (-)
XLOC_037631	NA	non-coding	upstream	781459	7499260 ~ 7505531 (-)
XLOC_037636	NA	non-coding	upstream	1223968	7941769 ~ 7942597 (-)
XLOC_037637	NA	non-coding	upstream	1442540	8160341 ~ 8163995 (-)
XLOC_037638	NA	non-coding	upstream	1566354	8284155 ~ 8286208 (-)

Expression

Co-expression Network