G1837393


Basic Information

Item Value
gene id G1837393
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18310903 ~ 18357077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2104028
TCATTTTGGAtttaaataaaattgtatttatttcagTTCAGTAGTACTGTTTATAAAAGAAGCAGTCTGCTTTGATGCCAACATATATATTTTGCATTTTTGGATGaacgtgtgtgtcagtgtgtatgtaaCCTCTAATTCTTGGATACGTGCGTGCAATAGGTGAATTTGAATTTGTCTGAGGTTGTGTTTTTAGTCCCAATGAATGTGTGTCTGAGTCTATGTGTCTGGATGTTAGTAAGGCAACACGCAGTCTCGTTTGAGACGGCTTCAAAGGACAAACACCGTGATGGTTTAAAAGACCTGTTCAAGTCACcgaaagcagacagacaggggagggggCAGGGTACACTGTTGAGTGACCTGTAGGCGTCGCTTGAATGAAGGATCAGAGTGAAAGCATGATGAGGGGGGTGGAGAAATTGTTTTCCTCGAAGACCAGATGTACGGGATGTCAAGGTATTTGACCTGTCGACTACTCGTATTCACGTCTGAGGTAGGCCTACATACTGAATCTGGAAGTGGGACCATTATACTATATCTTTAGTCTGATCACATACATACTGAATCTGGAAGTGGGACCATTATACTATATCTTTAATCTGATCACATACAtacatttcatttttttcattGCCTTTCATTGCAACTAGTCAAACACAAGATAAAGGCCGTTGGAAACTCCTAACGTCACCTTTCTCTCTTTGATTTCTCTATATAGCAGACCCAGGGTTCGGGGCAGAGAGACAGCAGGAAACACCACCGACAGTATCTGTTTATGAGATACAGAGTAGCCTGTCTGTACTGCAGCCCCACTGCAGGTGCGAGACGGCCTGGGTCATGTGATGGGGGAGCTGTTAATCCATAACTTCACCTTCACTCTGACCCTGAACCCTGTTTggcaacactttatttggatagtctgtAGAGTATCGACAGATGGACCATCTatagactatcagtaacatttcaactaactatctactaaccctaacccatattctaaacctaaccctagcagtAACCTTAGCAAGATAGTTTGCTGATCGCATGGCCATCTGTAGAGCGTCTACAGATGGAAAATCCGGGCTATCTAAATAAAGTGTCACCCTCTGTTCTGTCACAATAAGGATGAGGGGGCGTCAGGCATTAAGACACACAGGGTTAAATTAACTCACTTCAAAACACATCTTCATCAACAAACCTGACCAACGCATACACTGACATGAGTACATCTACTGTATAAGTACTGGTGTTACATTATCTGACAGAGTGCACACTACCAGGAAGTCTCACATTGCCAACCCTCTCGGAGAGGACTAAAAGTATTGTTCTGCGAAGGCTTTCTCAATGTCctggtgtgtatgcatgtgtgaactgtatgtttgtgtatgtgtatgtgtggtatCGTGTAGGATGACCTGGAGTGGTGGGCAaagggaatgggggggggggggtcacagtgGTAAGGTGGGTAATAGTCAGGGGTGAGGGATATGGACGGTAAAGGTATACGGGGCAGGAATGTGTAGCTTGTATGGTGAGGGATGTTGTGGACGGGGAGGATCTTTCAGAATGTTTCGTTTCCATCGAGTCACACAAAGAAAGCatcagaggggggggggcacaccGGGGTTGGTAGCCCTCCCCAGAAACAAGAGTTGGCAATGGGAGACGCAGGACGAGCAGCATCTAACACGGCATTTCTTCCGGAAGAGAGGACGAGGGAGGCTGCTGCAGATCACTGATGTCAGAACCAACACTCctgagAGAATGGGGATCAGCATGTGAATGAATAGATACCGTCTCTACTCCTATTGCTGCGGCAGCCGCCTGTTGCTGCTACAGAGGAGGATGGCGATGACAACTTCCTCTGATGCAATATCCAGCTGAGCATGTGAGTAATGGATTTGGAGGAGGGTTAAGCTGGAAAGAAATACATCTCTTTAGTAGGGGAGTTGAGGCTTCAATGGGAGAACATGCATTGGGATATTACGGGCTCAGGCACTTAGGAAAAAAGATACGTCCTAGACAGTTTCGTCCTAGACAGTTTCCTCACGAGTTGATTCATGCCCAACAATTACCTTTGCAATCATCTCTACTAGGATATCAATTATAATTATGACTCCCGGCATGGCATTATGGTAATAGTTTGGTGAATGGTCTAAAGTGTGATAATCAAGTTTGATTCTGATTATTCATGGCAGTGGCAATATTGCCTGATTTGGTTGTAGAAATGTTAATATAATTAAAGTTATTGCTGTGGGAATAAATATGACCTCAATCCCCAATATTATAATGATTATAATTCATACGGGCAATTCTAGCAGGAACTGACTTTAATCATGTCCTAACCACATAATACATCAGAGACTGAGATTGTGAAGATGAGAGTGATTGTAGCATGTCATCGGGTATGGATATGGTTGTTATACTTGACCTTGCCTCTACTGTACTCTCTCCCACAAAAGgcttttaagtgcctttgaaaatgGCACATGACAGAGCTGTGAGAGCGAGACGGAGCGATAGGAGATTGAAAAAGGGAGGGGGTTGAATGTATGCTGTGGAGAGGAGCGATGGAGAGATGGTTTGAGCTGTGGATGTAATTGCAGATGGATCTTCTTGATTTACATTATAAAGAGCCTGAAAGaagaaaggacacacacacacacacacacacacacacagcaaccttCTCTCGGGGCTCAGGgcattcatattattctgtacataaatcggagacactccatttagtatgatatattacgtttcgtatggtaagtattcatttgtggatgtccatcacccattacGCATAATATGTaacgaattacaattcgtattacaggttacgaatttgctaaatttataatatgttacgaatatgcaaaacgtatgatacagtatgtttcGAATCCTAGCTAGGTGGTTTACATTAgataggctaggggttagggttaaggttaggagttaggttaaagggttaaggttagggttaggggaagggttagcttaaagggttagggttaggggaagggttagctaaaagggttaaggttagggttaaggttaggagttaggttaaagggttaaggttagggttaggggaagggttagcttaaagggttggggttagggttaggggaaggggaagggttagggttaggggaagggttagcttaaagggttaaggttagggttaggggaagggttaggggaagggttagctaaaagggttaaggttagggttagggttaggggaagggttagctaaaagggttacggttaggggaaggttggctaacatgctaagtagttgcaaagtagaaAAACATGTGTAAGTAAGaaataaaatgctaaagttgtcaatgatgagatttgaactctcaacctttgggttgctagacgttcacaTTATACGCCCATCCATCGACCCCGACCAACCATCCTACTTATATTTTttccttaagtaaccatctgttaACATACctaacgtaacatatcatactaatttgagtgtctcgGATTGACATTTACTATGTcaagtctatgagaccaggctgcgcacacacatgcacaaatgcacacatgcacccacacatGCTTACCCAAGCACTCAGGCATACATAAACGTACACTCACCCATGCCTGCATgttcacccacaaacacagaatATAGATTTAGAGTGGAATTAGTAATTTTGCACCCGAGTGgtccagcggtctaaggcactgcacctcagtgctagaggcgtcactacagaccctggttcgatccatgggctgtatcacaaccggccgtgatcgggagtcccatagggcgccgcacaattggcccagcatcggtTTGGCTGgaataggccatcattgtaaaataagaatttgttcttaactgacttgcctagttaaataaaggtgaaataaaatctgcatatctaagcatgCATCTTGAGCTGTCTGGATCCTCCTGACtggacattattttattttttttaaggaacataatatgcttctctgcatctctgctatgATCTCTGGGTAAAAGATGGgagaaaggaatgtgagtcttattcagtacatttagctTCATTTTCCAAAGTCCGCCAAcctagttagacaagctagctactctaacttgattgatagcctgaaatggcttcttggtagctagttatgaggttgggagattggatctatctgggctagctaaagacAACTTCAtcaaattgctaggtggctattagtattacagagaaacaaacaaaaaaattgtaaatatatatttttaaacaagaCAAATCTGAGGGAGCACGTGCCCCTGTGCCCCTGTGCCCCCTCTGGGCATGATGCCTCCGACTGTAATATCGCGGGGACACAGCTGCTGTATCTTCACTGCAGTACAAACGACCACAACACAATACTGAAGGGCAGCTTTTAAATGAATCTTAATCAATGTAATCTTTTAATAAAGGTATTCATACTCTACCTTGACATGTGTTGTGTTATTTCATGTATATTTCATGTATATGCATAGAAAACAATTACATGGTCTACATTCCTTTGAATTCATTGTGTGATTTGTGATTGGAAATGTTTTCTCAATGTGAACATAAATTCCCAGCTTGAGGAAATATTAGCTCATTTGGAGCTGACTGGTCGCAGGCCCACCTGTCCACCCTCAAACCAACCAGCACCCAATCACCACTGCTGCCTACCTGCCAGCACCCAATCACCACTGCTGCCTACCTGCCAGCACCCAATCACCACTGCTGCCTACCTGCCAGCACCCAATCACTACTGTTGCCTACCTGCCAGCACCCAATCACTCCTATAGACTACTGTACCAGCCAGCACCCAAGTTGACAGCGTATTACTGCATATAAAGGCATGGTGCTTCAATGAGAAGAAGACAATAAAGGCAGCAAGCATCATGCcatgcattcattcattcattcattcattctacGAAACTATCCACCACACACCCCTTCAGAACCAGAACCAGCCACCTCAGGCTTAACGTCCAGAGCTACAGCTTCTTCCTGTTCCTGCCAGACACAACAGTTATGGGTGGAAGGAGAAGAAATTATACAAGTTACCAACAatacgcacagacagacacacacaaacataaaagACACAAGTAAGCGTTGATCCTTTTCCTCGGCATTCCTTATAACAGAGACACTAAAATCAGAGATATGCACACAAACATTAATACGACAAGTCAACTTGGAAAAATCTGTGTTTTTGAGACCAGGATAAGATTGTTGAAGGATGGACCTGTTGAAGTCTCTTCTCCTGTAATCGCAAGGCTGATCTCAAGTCTGTTATAACTGTCTCTATTCCAACCACCTCCAACCATCCAGCCCACAGTTCCTCGTAGTGGAGAGGGCTTGTCATAATCTTCACAATATGAAAAGACAGGATGTgactcacctggttcaccaatcCGGAGTTCACCGCTGCGTTCTCCATCCCTTCCACTGTTTGCTGAGACAGCTCATTGGCTCCGGCGACCGTTGCGTCCCCGACAATATTGGCTTGGTCAGTTGTTCTCTGGGCCACTGGGAGAAGGGGGACAGGGGGTTGTCACACTCTGTCCTCTGAGAACCAATGTTTCACCTCAGAATTTGGTTTGTGAAAA
>TU2104030
TCATTTTGGAtttaaataaaattgtatttatttcagTTCAGTAGTACTGTTTATAAAAGAAGCAGTCTGCTTTGATGCCAACATATATATTTTGCATTTTTGGATGaacgtgtgtgtcagtgtgtatgtaaCCTCTAATTCTTGGATACGTGCGTGCAATAGGTGAATTTGAATTTGTCTGAGGTTGTGTTTTTAGTCCCAATGAATGTGTGTCTGAGTCTATGTGTCTGGATGTTAGTAAGGCAACACGCAGTCTCGTTTGAGACGGCTTCAAAGGACAAACACCGTGATGGTTTAAAAGACCTGTTCAAGTCACcgaaagcagacagacaggggagggggCAGGGTACACTGTTGAGTGACCTGTAGGCGTCGCTTGAATGAAGGATCAGAGTGAAAGCATGATGAGGGGGGTGGAGAAATTGTTTTCCTCGAAGACCAGATGTACGGGATGTCAAGGTATTTGACCTGTCGACTACTCGTATTCACGTCTGAGGTAGGCCTACATACTGAATCTGGAAGTGGGACCATTATACTATATCTTTAGTCTGATCACATACATACTGAATCTGGAAGTGGGACCATTATACTATATCTTTAATCTGATCACATACAtacatttcatttttttcattGCCTTTCATTGCAACTAGTCAAACACAAGATAAAGGCCGTTGGAAACTCCTAACGTCACCTTTCTCTCTTTGATTTCTCTATATAGCAGACCCAGGGTTCGGGGCAGAGAGACAGCAGGAAACACCACCGACAGTATCTGTTTATGAGATACAGAGTAGCCTGTCTGTACTGCAGCCCCACTGCAGGTGCGAGACGGCCTGGGTCATGTGATGGGGGAGCTGTTAATCCATAACTTCACCTTCACTCTGACCCTGAACCCTGTTTggcaacactttatttggatagtctgtAGAGTATCGACAGATGGACCATCTatagactatcagtaacatttcaactaactatctactaaccctaacccatattctaaacctaaccctagcagtAACCTTAGCAAGATAGTTTGCTGATCGCATGGCCATCTGTAGAGCGTCTACAGATGGAAAATCCGGGCTATCTAAATAAAGTGTCACCCTCTGTTCTGTCACAATAAGGATGAGGGGGCGTCAGGCATTAAGACACACAGGGTTAAATTAACTCACTTCAAAACACATCTTCATCAACAAACCTGACCAACGCATACACTGACATGAGTACATCTACTGTATAAGTACTGGTGTTACATTATCTGACAGAGTGCACACTACCAGGAAGTCTCACATTGCCAACCCTCTCGGAGAGGACTAAAAGTATTGTTCTGCGAAGGCTTTCTCAATGTCctggtgtgtatgcatgtgtgaactgtatgtttgtgtatgtgtatgtgtgGGTCACACATTGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2104028 False 5650 lncRNA 0.44 5 18310903 18318253
TU2104030 True 1419 lncRNA 0.43 2 18310903 18357077

Neighbor

gene id symbol gene type direction distance location
LOC100136626 LOC106606089 coding upstream 10625 18269654 ~ 18300278 (+)
LOC110502377 LOC106606050 coding upstream 69405 18177713 ~ 18241498 (+)
LOC118943922 LOC106606023 coding upstream 156600 18152331 ~ 18154303 (+)
entpd6 enp6 coding upstream 245630 18053919 ~ 18065273 (+)
LOC110502370 NA coding upstream 363495 17943337 ~ 17947408 (+)
LOC118943821 NA coding downstream 376684 18733761 ~ 18737482 (+)
zgc:153169 LOC105005758 coding downstream 429658 18786735 ~ 18805566 (+)
LOC110502392 LOC105005759 coding downstream 448811 18805888 ~ 18819619 (+)
LOC110503087 NA coding downstream 563121 18920198 ~ 18966527 (+)
LOC110502398 LOC106576696 coding downstream 638516 18995593 ~ 19002210 (+)
G1837473 NA non-coding upstream 2115 18308389 ~ 18308788 (+)
G1837471 NA non-coding upstream 5314 18305369 ~ 18305589 (+)
G1837469 NA non-coding upstream 5985 18304708 ~ 18304918 (+)
G1837458 NA non-coding upstream 10097 18293699 ~ 18300806 (+)
G1837454 NA non-coding upstream 44854 18265767 ~ 18266049 (+)
G1837401 NA non-coding downstream 15758 18372835 ~ 18373336 (+)
G1837396 NA non-coding downstream 59279 18416356 ~ 18440842 (+)
G1837635 NA non-coding downstream 257826 18614903 ~ 18615237 (+)
G1837637 NA non-coding downstream 261632 18618709 ~ 18619279 (+)
G1837643 LOC106606172 non-coding downstream 267297 18624374 ~ 18627502 (+)
G1836916 NA other upstream 985543 17322174 ~ 17325360 (+)
G1836646 NA other upstream 1198076 17112370 ~ 17112827 (+)
G1836321 NA other upstream 1417564 16892235 ~ 16893339 (+)
G1838719 NA other downstream 591440 18948517 ~ 18949003 (+)
G1839383 NA other downstream 1165187 19522264 ~ 19523012 (+)
LOC110502420 slc18a2 other downstream 1680046 20037044 ~ 20058237 (+)
G1839872 NA other downstream 1706767 20062064 ~ 20064987 (+)
LOC110502429 ttc27 other downstream 2001720 20358591 ~ 20516930 (+)

Expression


Co-expression Network