G1837643 (LOC106606172)


Basic Information

Item Value
gene id G1837643
gene name LOC106606172
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18624374 ~ 18627502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2104311
GCTAGCACAGCATTTACAAACAAAGTCCAAAAATGGAAACCTGTCAACCCTTCCTTTATACTACTAAGAAAACCCATCGTCTTAAAATTTAAGGTCGAAGGCTATCATTATCTGTACACACAGTTACACTGTTCGGCTTTTGCAGTCTCTGTTGATTAgcatgttaaaaaaataaaatggacACAGTTACCTTCTGTTCTACTGACAATCCACGAGGGGGAAGTGTTGCTTAATGTACACGAACGAAGGATTCATTCCTTTTCATTAAAATGAGTCTCACTAAAGTGGCACTCTTTGGTTAAGTGTTTAACATTTCCGTTTCACCTGATGAATTGCACAGCAGTTGTGCATCCTAAATTCTGCATTAACTATATGATTTTAGCAGTTGTTTTTTTATCTTAAGACACTCAAAACCTTTCTTCCATAAGCTCCATTCTTTTCATATTCCCTCAGTCATATCTACAGTGTAGAAAAATAAGTGTACAAATATTCAAAACAAATCAGCAATATCGTAGAGAGCAACAAAACATAATTTAGTAATTTCCTTCATTTCAGATTGTAGATAACCTAAGTGTATTTTGTAAGGCTGTAGCTCTCCTTTCCTCACAAGTCAAAAAAAGCAACTTCACTCTAATTGGGACTCTAATGATCCGCAAGTTTACATCATCAGATCTAAAAATCTGCCTCAAAAAACGAGGTAAAGTTGGCTTTTGTTGTATTCCAGAGCTATAAATCAGCATCTTAGTAATGTCTGGGTTGAGATTTGAATTAGGAACTTAAACTCAACATCTCCAGCCATCGTGCATCACAAAAATAAAAGATCAAGAAAAATGGCTCTAGCATCAAGATTCAACTCGTAAGATTTGTTAAAAGCCATTGAATTGACCGTTTTATAATCAGTTCCTATTTTGTTCTCTGTAAAGTATCCTAAAATACAGATGTGTACACTGTCATTACGTTTTCTCTAAGAGCGTAAACCTCTGTACTGTACCTCCTTAGCACTCAGGATCCCCATCGAACTTACACAAGTACAAAAATAGGCTAACATTGAGAGTCTCCCGTAACAACGGGAGAAATGGCAATAGAATTAAAACAGCAACCGATACAATTATCTTAACACTTCTGAAGTGCACTAAATGTGTGTTCAACGCAGTTAAGTAAATTCACTGCACTAAATCTCATATATACTTAATATATTGTACACTAAGCTCCGGGGTGACTCCCTCAGTCATAGATCTGCTGAACAACCATGCATAGCTGCAGGGCTGTGAAAAGCCTCAAGAGAAACGTCTAGGGTCTTTAGCCCACACATAGGCCCATTCTGCAAGAGGGCTCTAGTCACCAGACAGTGctagctagttgagagaatgcaaagtaCAGCAGGTCTATGGCAGAGTATATACAGGCTAGGCCTGTAGATTAGTTTGATAATCTAGACACTACTTACCCAGAGCGCGCTAAAAATGATAAATAGAGTAATACAGTAAGTAAATAGTGTGTCGTCTCTTTCTGTGCAGACAGAGATGGGTTGGTGTGAGAAAGCAGCCTTATGACACATCCATTTCACTCTCACACCTGTAAAAGGAGTTTTCATGACTGACAATAAAACGTGTACAACTTCCAATTGTACCTCTCACTCCGCCTTGGCCCTCATCCCCACCATGTAACTCAACTTCCATCTTCATTCTCCCGTCTGTAACAGGCTTCCTCAAACAATGGGTTCATTTGTGACCCCTGGGAACATCAGTGTAACCCTAAACGCCAGCTGTGTTGGGTGCCGATGTGTTTATGGGGTGTCCTAACCTCCCAGAAGCACAGTGCCTTagtggccatgtactcttataatctccaccggcacagccagaagaggattggccacccctcagagcctggttccacttaagttttcttcctaggttcctacctctctagggagtttttctttccttctcacaacgtgcttctacatctgcattgcttgctctttggggtattaggctgggtttctgtataagcactttgtgacactctgctgatgtaaaaagggctttataaatacacttGATTGACTGATTGAGTGCCTCTTGCCATCCACCTCAGTGGACACTACACAGCCCCACTTCTACCCAGCCTGTGACCTTCCAATGATGGATCACATCATCTTTAAATAACCTTAGATGACGAGCAGCCATAAAGACTAAATATAAACTCTATAGAAATATACCAGGTTAAGGACCAGATATAGTGGTTGGACTGTCTGGTTAAAGAGGGTTTGGGTGAGATGGGGGCTGGGGTTATACTATAGACATCAATTGATGGGAAACTAAAGGGCCACAATCTGCTAGAACAATGTGTCCCAAGATTGCTGTGAGCCTCCTTAACTGCATTCTACAACAGCAGAGTCTGACATCTATAGCCCaatggggaacagagagagaaagagggtgtgtgtgtgttgggagtaaACTGGGTCCATTTGCAAGGTGAGCTGGATCAGCTGGCAGGCCGGAAACGGGCCATGTAAACCCCACAGGACTGGCAGTAGTGACGGGATGGCTCGGTGGGCAGCTGTTGGcacagggaacagagctgggcaCTACCGGGGCCACGGGACGATGCCATCATACGGGGGTGGTCATGCCTCTGGGTGGGCTGATGGAGGGGGTGGGCATGCCGCATGGGCATGGACAGCGGTACAATCCTGTAGTCGGGGGTCCTCCAGTCATCATCCGGGGGTATGTCCAGGCGGAGGGGCTGGTTGGAGGTCTCACTGGAAAGCCGGTGGTGGGCTGGGTGGTGTTGTGGTTGTAGACGGGAAGGTAGGGTTCCATTGGTCCTGCTGGATTGAGGAGGCTGCCTGTAGCCATTGATGGCGCCACTAGGGTGGGCAGAGTGGCGGGGGTGGGAGAGGGTGGCATAGCCCATGTCTGGGCGGCTGTAGTACCCAGGTCCCGGGTTGGGTCCTTCCCTGGGtcgggggagagaggaggaccagGAAGGAGGTGTCCTGGGAGGTGCCCGCGGCAGCGTGCCGTAGCTCAGTGCAACACTGTGGTAGTTTTCACGGGAGAAAGCTTCACCCCGGTCAAACACAGCCAGAAACTGGT

Function

NR:

description
inactive ubiquitin carboxyl-terminal hydrolase 54-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2104311 True 3107 lncRNA 0.45 2 18624374 18627502

Neighbor

gene id symbol gene type direction distance location
LOC110502381 LOC106606107 coding upstream 252368 18346584 ~ 18372006 (+)
LOC100136626 LOC106606089 coding upstream 324096 18269654 ~ 18300278 (+)
LOC110502377 LOC106606050 coding upstream 382876 18177713 ~ 18241498 (+)
LOC118943922 LOC106606023 coding upstream 470071 18152331 ~ 18154303 (+)
entpd6 enp6 coding upstream 559101 18053919 ~ 18065273 (+)
LOC118943821 NA coding downstream 106259 18733761 ~ 18737482 (+)
zgc:153169 LOC105005758 coding downstream 159233 18786735 ~ 18805566 (+)
LOC110502392 LOC105005759 coding downstream 178386 18805888 ~ 18819619 (+)
LOC110503087 NA coding downstream 292696 18920198 ~ 18966527 (+)
LOC110502398 LOC106576696 coding downstream 368091 18995593 ~ 19002210 (+)
G1837637 NA non-coding upstream 5095 18618709 ~ 18619279 (+)
G1837635 NA non-coding upstream 9137 18614903 ~ 18615237 (+)
G1837396 NA non-coding upstream 183532 18416356 ~ 18440842 (+)
G1837401 NA non-coding upstream 251038 18372835 ~ 18373336 (+)
G1837394 NA non-coding upstream 263470 18326933 ~ 18360904 (+)
G1837746 NA non-coding downstream 147017 18774519 ~ 18780707 (+)
G1837798 NA non-coding downstream 264331 18891833 ~ 18892379 (+)
G1837813 NA non-coding downstream 287966 18915468 ~ 18915690 (+)
G1838727 NA non-coding downstream 329841 18957343 ~ 18959859 (+)
G1838767 NA non-coding downstream 399203 19026705 ~ 19026919 (+)
LOC110502370 NA other upstream 676999 17943337 ~ 17947408 (+)
G1836916 NA other upstream 1299014 17322174 ~ 17325360 (+)
G1836646 NA other upstream 1511547 17112370 ~ 17112827 (+)
G1836321 NA other upstream 1731035 16892235 ~ 16893339 (+)
G1838719 NA other downstream 321015 18948517 ~ 18949003 (+)
G1839383 NA other downstream 894762 19522264 ~ 19523012 (+)
LOC110502420 slc18a2 other downstream 1409621 20037044 ~ 20058237 (+)
G1839872 NA other downstream 1436342 20062064 ~ 20064987 (+)
LOC110502429 ttc27 other downstream 1731295 20358591 ~ 20516930 (+)

Expression


Co-expression Network