G1838711 (LOC100380853)


Basic Information

Item Value
gene id G1838711
gene name LOC100380853
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18942281 ~ 18943024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2105483
gctgtaacctatagcaaacctcgttcagtctcctcaggactttgaatggccccacaaaccgcggacccagctacCGGCAGGGCAGgtgaaggggcaggtttcgggtcgagagccagacccgatcCCCCGGTGCATACACCGGGGCCTCATTGCGGTGGCGGTCGGCACTCATCTTCTGCCGCCTGATGGCCCTTTGCAGACGCACATGGGCAGCGCCCCATGTCTCCTCCGAGTGCCgaaaccattcatccaccgcaggagcctcgatctggctctgatgccatggtgccaggaccggctggtaacctaGCACACACTGAAAAGGtgacaggttagtggaggagtggcagagttttgagccatctctgcccaggggagaaacactgcccactcccccggccggtcctggcaataggaccgcagaaacctacccacttcCTGGTAGACTCTTTCCACCTGCCTGTtgctctcggggtgaaaacctgaggtaaggctgaccgagaccataaacgccctccagactttagacgtgaattggggaccccgatcagaaactatatcctcaggcaccccgtagtgccggaatacGTGGGTGAatagggcctccgcagtctgtagggccgtagggagaccaggcaaagGAAGGAGATGGCAGGACTTACCCCGCGAGGGTGGAAGATCCGTCAGGAAATCCACCGAGAGGTGTGACCACGGTGGTTGTGGAAGGGGAAGGGGTTGTAATTT

Function

NR:

description
PREDICTED: transposon Tf2-1 polyprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2105483 True 744 lncRNA 0.59 1 18942281 18943024

Neighbor

gene id symbol gene type direction distance location
LOC110502397 LOC106608657 coding downstream 31474 18907082 ~ 18910807 (-)
LOC110502395 LOC106606259 coding downstream 81292 18854957 ~ 18860989 (-)
LOC110502394 LOC106606249 coding downstream 88059 18849389 ~ 18854222 (-)
LOC110502393 LOC106606239 coding downstream 113313 18823584 ~ 18828968 (-)
LOC110502390 LOC106606232 coding downstream 154522 18777758 ~ 18787759 (-)
LOC110502401 LOC106606294 coding upstream 140350 19083345 ~ 19092148 (-)
si:dkey-51a16.9 LOC106576688 coding upstream 168934 19111958 ~ 19145332 (-)
LOC110502406 LOC106608672 coding upstream 301271 19244295 ~ 19260880 (-)
LOC110502408 LOC106606370 coding upstream 318046 19261070 ~ 19385465 (-)
LOC110502410 LOC106606442 coding upstream 562806 19505830 ~ 19631049 (-)
G1838709 NA non-coding downstream 737 18941287 ~ 18941544 (-)
G1838628 NA non-coding downstream 136716 18804077 ~ 18805565 (-)
G1838521 NA non-coding downstream 323136 18618299 ~ 18619145 (-)
G1838416 NA non-coding downstream 458492 18466496 ~ 18483789 (-)
LOC110502384 LOC106606127 non-coding downstream 567323 18373928 ~ 18434140 (-)
G1838716 NA non-coding upstream 3719 18946743 ~ 18946960 (-)
G1838720 NA non-coding upstream 5729 18948753 ~ 18948980 (-)
G1838778 NA non-coding upstream 8472 18951496 ~ 19016128 (-)
G1838819 NA non-coding upstream 81482 19024506 ~ 19024739 (-)
G1838822 NA non-coding upstream 85183 19028207 ~ 19028418 (-)
LOC110502361 LOC106605890 other downstream 1211769 17725263 ~ 17781515 (-)
G1837980 NA other downstream 1223077 17709772 ~ 17719204 (-)
LOC110502353 LOC106605805 other downstream 1516961 17420323 ~ 17425430 (-)
G1835092 NA other downstream 3194546 15745638 ~ 15747735 (-)
G1841694 NA other upstream 2000283 20943307 ~ 20943615 (-)
G1841959 NA other upstream 2402490 21345514 ~ 21371799 (-)
G1843946 NA other upstream 4239963 23182987 ~ 23233423 (-)

Expression


Co-expression Network