G1838848


Basic Information

Item Value
gene id G1838848
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 19053688 ~ 19054079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2105624
tttgcatgCGCTCAAGTAGACTTTGCACTTTCCTccggtatttatttagcaaagatgaTAATGAAGGTTGATTATGTAATCACGGTTATGTGAGCtatatggatcactccaatatattggtatCACTCCGCAGCGGAGGGATACATCCAAGGTGAGGGTTTACAGATTTACTCCTGTGTACACCTGTGTCATGGCTGGGGTTTGCCCCTATATATAGACCATATGGCAAGGACACAAGTTCTCTACATAATTTTTGAGGCACCTCTAGCACCGTAGAGGTTTGGAGTGATCCATAAAGCTCACATAATCGTGGTTACATACGTAACCTTCGTTATGTTTCACGGACAGAAGATACAGGTCAACCCCTTGCAGCAAGTGGAGAACCCAAAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2105624 True 392 lncRNA 0.43 1 19053688 19054079

Neighbor

gene id symbol gene type direction distance location
LOC110502399 LOC106606289 coding upstream 13654 19008236 ~ 19040034 (+)
LOC110502398 LOC106576696 coding upstream 51478 18995593 ~ 19002210 (+)
LOC110503087 NA coding upstream 87161 18920198 ~ 18966527 (+)
LOC110502392 LOC105005759 coding upstream 234069 18805888 ~ 18819619 (+)
zgc:153169 LOC105005758 coding upstream 248122 18786735 ~ 18805566 (+)
LOC110502400 NA coding downstream 22398 19076477 ~ 19078412 (+)
LOC110502403 LOC106606339 coding downstream 97106 19151185 ~ 19168638 (+)
calhm3 calhm3 coding downstream 114721 19168800 ~ 19171227 (+)
LOC110502405 LOC106606354 coding downstream 139838 19193917 ~ 19226992 (+)
LOC110502412 LOC106606477 coding downstream 444255 19498334 ~ 19505841 (+)
G1838832 NA non-coding upstream 11106 19042349 ~ 19042582 (+)
G1838747 NA non-coding upstream 13388 19040153 ~ 19040300 (+)
G1838771 NA non-coding upstream 24349 19029116 ~ 19029339 (+)
G1838770 NA non-coding upstream 25042 19028385 ~ 19028646 (+)
G1838767 NA non-coding upstream 26769 19026705 ~ 19026919 (+)
G1838856 NA non-coding downstream 2670 19056749 ~ 19056987 (+)
G1838872 NA non-coding downstream 12145 19066224 ~ 19066444 (+)
G1838878 NA non-coding downstream 18379 19072458 ~ 19072756 (+)
G1838885 NA non-coding downstream 24916 19078995 ~ 19079355 (+)
G1838719 NA other upstream 104685 18948517 ~ 18949003 (+)
LOC100136626 LOC106606089 other upstream 753412 18269654 ~ 18300278 (+)
LOC110502370 NA other upstream 1106313 17943337 ~ 17947408 (+)
G1836916 NA other upstream 1728328 17322174 ~ 17325360 (+)
G1836646 NA other upstream 1940861 17112370 ~ 17112827 (+)
G1839383 NA other downstream 468185 19522264 ~ 19523012 (+)
LOC110502420 slc18a2 other downstream 983044 20037044 ~ 20058237 (+)
G1839872 NA other downstream 1009765 20062064 ~ 20064987 (+)
LOC110502429 ttc27 other downstream 1304718 20358591 ~ 20516930 (+)
G1840558 fbxo28 other downstream 1727786 20781865 ~ 20785203 (+)

Expression


Co-expression Network